Basic Information
Accession number
GCA_000009385.1
Release date
2007-03-29
Organism
Streptococcus pyogenes str. Manfredo
Species name
Streptococcus pyogenes

Assembly level
Complete Genome
Assembly name
ASM938v1
Assembly submitter
Holden M.T.G., Pathogen Sequencing Unit, Sanger Institute Wellcome Trust, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UNITED KINGDOM
Assembly Type
haploid
Genome size
1.8 Mb
GC percent
38.5
Contig count
1

Collection date
-
Sample location
-
Host
-
Isolation source
-
Isolate type
-
Strain
Manfredo
Isolate
-
ARG List
ORF_ID Pass_Bitscore Best_Hit_Bitscore Best_Hit_ARO Best_Identities ARO Model_type SNPs_in_Best_Hit_ARO Other_SNPs Drug class Resistance mechanism AMR gene family Description
AM295007.1_175 # 193824 # 195530 750.0 773.081 patA 65.96 ARO:3000024 protein homolog model fluoroquinolone antibiotic antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump PatA is an ABC transporter of Streptococcus pneumoniae that interacts with PatB to confer fluoroquinolone resistance.
AM295007.1_176 # 195533 # 197317 750.0 831.247 patB 66.61 ARO:3000025 protein homolog model fluoroquinolone antibiotic antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump PatB is an ABC transporter of Streptococcus pneumoniae that interacts with PatA to confer fluoroquinolone resistance..
AM295007.1_339 # 378480 # 379223 50.0 110.153 vanY gene in vanB cluster 31.15 ARO:3002956 protein homolog model glycopeptide antibiotic antibiotic target alteration vanY; glycopeptide resistance gene cluster Also known as vanYB, is a vanY variant found in the vanB gene cluster.
AM295007.1_1732 # 1760366 # 1761586 800.0 813.142 lmrP 99.26 ARO:3003969 protein homolog model macrolide antibiotic; lincosamide antibiotic; streptogramin antibiotic; tetracycline antibiotic antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump lmrP is a proton motive force-dependent drug transporter that is part of the MFS efflux pump family.
VF List
Query_id %Identity E-value Related genes VF ID Virulence factor VFcategory VFcategoryID Characteristics Description Strain
AM295007.1_140 99.825 0.0 slo VF0250 SLO Exotoxin VFC0235 A member of the cholesterol-dependent cytolysin family, related to pneumolysin from S. pneumoniae (slo) streptolysin O precursor [SLO (VF0250) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_167 100.0 8.13E-172 speG VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (speG) streptococcal exotoxin G precursor [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_172 90.604 0.0 hasC VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasC) UTP--glucose-1-phosphate uridylyltransferase HasC [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_531 100.0 0.0 mf3 VF0252 Mitogenic factor Exoenzyme VFC0251 DNase B has been shown to be the same molecule as the streptococcal mitogenic factor (MF). It does not contribute significantly to the superantigenic activity of S. pyogenes when compared with other Spes (mf3) deoxyribonuclease [Mitogenic factor (VF0252) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_738 73.835 1.37E-132 grab VF0254 GRAB Others VFC0346 Surface protein: linked to the bacterial cell wall via C-terminal LPXTG motif; high affinity (Ka = 2.0 x 108M-1) for <term>alpha2-macroglobulin (alpha2M)</term>; encoded by grab gene that is present in most S. pyogene strains and is well conserved (grab) protein GRAB (protein G-related alpha 2M-binding protein) [GRAB (VF0254) - Others (VFC0346)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_803 60.7 1.13E-107 cfa/cfb VF0280 CAMP factor Exotoxin VFC0235 CAMP factor, a pore-forming protein toxin of ~24 kDa gives rise to the so-called CAMP reaction, which consists of a zone of strong hemolysis that is observed when S. agalactiae is streaked next to Staphylococcus aureus on sheep blood agar. S. aureus secretes sphingomyelinase. Sheep red blood cells are rich in sphingomyelin and, upon exposure to sphingomyelinase, become greatly sensitized to CAMP factor, which then effects hemolysis. This co-hemolytic phenomenon was first described by Christie, Atkins, and Munch-Petersen, and the CAMP acronym represents these investigators' last names.; Paralogs of <iS. agalactiae</i> CAMP factor genes have been sequenced in a wide range of Gram-positive pathogens, including Streptococcus uberisand Cutibacterium acnes (cfa/cfb) cAMP factor [CAMP factor (VF0280) - Exotoxin (VFC0235)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
AM295007.1_970 62.308 3.7E-56 msrA/B(pilB VF0456 MsrAB Stress survival VFC0282 Methionine sulfoxide reductases (Msr) are enzymes that catalyze the reduction of free and protein-bound methionine sulfoxide (MetSO) back to Met. Two structurally unrelated classes of Msrs have been described so far. MsrAs are stereo specific toward the S isomer on the sulfur of the sulfoxide function, whereas MsrBs are specific toward the R isomer (msrA/B(pilB)) trifunctional thioredoxin/methionine sulfoxide reductase A/B protein [MsrAB (VF0456) - Stress survival (VFC0282)] [Neisseria meningitidis MC58] Neisseria meningitidis
AM295007.1_984 96.667 2.75E-35 hylA VF0246 Hyaluronidase Exoenzyme VFC0251 GAS are capable of producing two types of hyaluronidase, a bacteriophage associated enzyme and an extracellular hyaluronidase that is secreted from the cell; since the capsule of GAS is composed solely of hyaluronic acid, the hyaluronidase presumably benefits the phage by aiding in capsule penetration during its infection of or release from streptococci (hylA) hyaluronidase [Hyaluronidase (VF0246) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_985 98.363 0.0 hylA VF0246 Hyaluronidase Exoenzyme VFC0251 GAS are capable of producing two types of hyaluronidase, a bacteriophage associated enzyme and an extracellular hyaluronidase that is secreted from the cell; since the capsule of GAS is composed solely of hyaluronic acid, the hyaluronidase presumably benefits the phage by aiding in capsule penetration during its infection of or release from streptococci (hylA) hyaluronidase [Hyaluronidase (VF0246) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_999 99.089 0.0 fbp54 VF0243 FBPs Adherence VFC0001 Surface protein: linked to the bacterial cell wall via C-terminal LPXTG motif; including PrtF1 (protein F1) also known as SfbI (streptococcal fibronectin binding proteinI), SfbII/SOF (serum opacity factor), FbaA, FbaB, FBP54 (fibronectin-binding protein 54), protein F2, PFBP (pyogene fibronectin-binding protein) (fbp54) fibronectin-bing protein Fbp54 [FBPs (VF0243) - Adherence (VFC0001)] [Streptococcus pyogenes MGAS6180] Streptococcus pyogenes
AM295007.1_1003 100.0 4.96E-178 speH VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (speH) streptococcal exotoxin H precursor [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1004 99.351 3.29E-111 speI VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (speI) streptococcal exotoxin I precursor [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1058 65.862 1.75E-142 wbtL VF0542 LPS Immune modulation VFC0258 The structure of Francisella spp. lipid A is unique in that it is modified by various carbohydrates that greatly reduce TLR4 activation and allow for immune evasion (wbtL) glucose-1-phosphate thymidylyltransferase [LPS (VF0542) - Immune modulation (VFC0258)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
AM295007.1_1122 90.244 1.75E-82 ideS/mac VF0284 IdeS Immune modulation VFC0258 A secreted 35 kDa protein, does not require processing or activation to exert its enzymatic activity; also described as a CD11b homolog protein, Mac, CD11b is the alpha chain of complement receptor 3 (CR3), which is the receptor on phagocytes that recognizes C3b (ideS/mac) immunoglobulin G-degrading enzyme [IdeS (VF0284) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1124 100.0 2.39E-27 ideS/mac VF0284 IdeS Immune modulation VFC0258 A secreted 35 kDa protein, does not require processing or activation to exert its enzymatic activity; also described as a CD11b homolog protein, Mac, CD11b is the alpha chain of complement receptor 3 (CR3), which is the receptor on phagocytes that recognizes C3b (ideS/mac) immunoglobulin G-degrading enzyme [IdeS (VF0284) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1228 100.0 8.81E-33 sagA VF0251 SLS Exotoxin VFC0235 Oxygen stable, most potent cytotoxin; not immunogenic; unstable polypeptide bounds to carrier molecules, such as serum albumin, RNA core, or lipoteichoic acid; responsible for the beta-hemolysis surrounding colonies of GAS grown on blood agar plates; SagA serves as SLS toxin precursor and eight additional genes in an operon is required for toxin maturation and export. pro-SLS is converted into an active cytolysin by the actions of SagBCD, a trimeric oxazole/thiazole synthetase. (sagA) streptolysin S associated protein [SLS (VF0251) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1244 100.0 0.0 mf2 VF0252 Mitogenic factor Exoenzyme VFC0251 DNase B has been shown to be the same molecule as the streptococcal mitogenic factor (MF). It does not contribute significantly to the superantigenic activity of S. pyogenes when compared with other Spes (mf2) deoxyribonuclease, phage associated [Mitogenic factor (VF0252) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1245 99.574 4.34E-172 speC VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (speC) streptococcal exotoxin C precursor, phage associated [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1336 69.697 0.0 tufA VF0460 EF-Tu Adherence VFC0001 (tufA) elongation factor Tu [EF-Tu (VF0460) - Adherence (VFC0001)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
AM295007.1_1471 76.948 2.6E-175 psaA VF0151 PsaA Nutritional/Metabolic factor VFC0272 Surface protein: lipid-attached; AdcABC is another ABC transporter for Zn2+ uptake (psaA) manganese ABC transporter, manganese-binding adhesion liprotein [PsaA (VF0151) - Nutritional/Metabolic factor (VFC0272)] [Streptococcus pneumoniae TIGR4] Streptococcus pneumoniae
AM295007.1_1503 61.979 5.69E-88 clpP VF0074 ClpP Stress survival VFC0282 21.6 kDa protein belongs to a family of proteases highly conserved in prokaryotes and eukaryotes (clpP) ATP-dependent Clp protease proteolytic subunit [ClpP (VF0074) - Stress survival (VFC0282)] [Listeria monocytogenes EGD-e] Listeria monocytogenes
AM295007.1_1625 75.433 2.19E-157 ska VF0247 Streptokinase Exoenzyme VFC0251 (ska) streptokinase A precursor [Streptokinase (VF0247) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1626 86.667 8.54E-92 ska VF0247 Streptokinase Exoenzyme VFC0251 (ska) streptokinase A precursor [Streptokinase (VF0247) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1642 92.275 1.76E-149 smeZ VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (smeZ) streptococcal mitogenic exotoxin Z [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1650 99.673 0.0 lmb VF0275 Lmb Adherence VFC0001 Lmb is an extracellular protein that was first identified in S. agalactiae. Homologs of this protein were reported in S. pyogenes and S. pneumonia and termed Lbp and AdcAII, respectively (lmb) laminin-binding surface protein [Lmb (VF0275) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
AM295007.1_1651 98.174 0.0 scpA/scpB VF0278 C5a peptidase Adherence VFC0001 All group A streptococcal serotypes and group B, C, and G streptococci of human origin produce the C5a peptidase. The enzyme is highly conserved. (scpA/scpB) streptococcal C5a peptidase [C5a peptidase (VF0278) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
AM295007.1_1667 99.497 0.0 speB VF0249 SpeB Exoenzyme VFC0251 (speB) pyrogenic exotoxin B [SpeB (VF0249) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1670 100.0 0.0 mf/spd VF0252 Mitogenic factor Exoenzyme VFC0251 DNase B has been shown to be the same molecule as the streptococcal mitogenic factor (MF). It does not contribute significantly to the superantigenic activity of S. pyogenes when compared with other Spes (mf/spd) deoxyribonuclease [Mitogenic factor (VF0252) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1690 67.238 0.0 groEL VF0594 GroEL Adherence VFC0001 GroEL of numerous bacteria, such as L. pneumophila, H. pylori, H. ducreyi, M. avium, S. typhimurium, A. actinomycetemcomitans and B. burgdorferi, has been shown to be involved in adhesion or invasion of various target cells or tissues. (groEL) chaperonin GroEL [GroEL (VF0594) - Adherence (VFC0001)] [Clostridium difficile 630] Clostridium difficile
AM295007.1_1797 99.523 0.0 hasA VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasA) hyaluronan synthase HasA [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1798 99.005 0.0 hasB VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasB) UDP-glucose 6-dehydrogenase HasB [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
AM295007.1_1799 99.013 0.0 hasC VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasC) UTP--glucose-1-phosphate uridylyltransferase HasC [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes