2. PATHOGENS
Basic Information
Accession number
GCA_000009585.1
Release date
2010-01-07
Organism
Staphylococcus aureus subsp. aureus ST398
Species name
Staphylococcus aureus
Assembly level
Complete Genome
Assembly name
ASM958v1
Assembly submitter
University Medical Centre Utrecht
Assembly Type
haploid
Genome size
2.9 Mb
GC percent
33.0
Contig count
4
Collection date
-
Sample location
-
Host
-
Isolation source
-
Isolate type
-
Strain
-
Isolate
S0385
ARG List
ORF_ID Pass_Bitscore Best_Hit_Bitscore Best_Hit_ARO Best_Identities ARO Model_type SNPs_in_Best_Hit_ARO Other_SNPs Drug class Resistance mechanism AMR gene family Description
AM990992.1_41 # 47524 # 49530 1250.0 1337.4 mecA 99.55 ARO:3000617 protein homolog model penam antibiotic target replacement methicillin resistant PBP2 A foreign PBP2a acquired by lateral gene transfer that is able to perform peptidoglycan synthesis in the presence of beta-lactams.
AM990992.1_120 # 117522 # 118910 525.0 902.894 norC 99.57 ARO:3007010 protein homolog model fluoroquinolone antibiotic; disinfecting agents and antiseptics antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump NorC is a multidrug efflux pump in Staphylococcus aureus that confers resistance to fluoroquinolones and other structurally unrelated antibiotics like tetracycline. It shares 61% similarity with NorB, and is a structural homolog of Blt of Bacillus subtilis. Like NorA and NorB, NorC is regulated by mgrA, also known as NorR.
AM990992.1_153 # 155714 # 157072 850.0 871.307 tet(38) 99.78 ARO:3000565 protein homolog model tetracycline antibiotic antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump Tet38 is a tetracycline efflux pump found in the Gram-positive Staphylococcus aureus. It is regulated by mgrA, which also regulates NorB.
AM990992.1_412 # 430138 # 430557 250.0 283.493 mepR 99.28 ARO:3000746 protein homolog model glycylcycline; tetracycline antibiotic antibiotic efflux multidrug and toxic compound extrusion (MATE) transporter MepR is an upstream repressor of MepA in Staphylococcus aureus. It is part of the mepRAB operon.
AM990992.1_413 # 430664 # 432019 850.0 873.618 mepA 98.23 ARO:3000026 protein homolog model glycylcycline; tetracycline antibiotic antibiotic efflux multidrug and toxic compound extrusion (MATE) transporter MepA is an efflux protein regulated by MepR and part of the MepRAB cluster. Its presence in Staphylococcus aureus led to multidrug resistance, while it has also been shown to decrease tigecycline susceptibility.
AM990992.1_749 # 798604 # 799047 270.0 301.212 mgrA 100.0 ARO:3000815 protein homolog model fluoroquinolone antibiotic; cephalosporin; penam; tetracycline antibiotic; peptide antibiotic; disinfecting agents and antiseptics antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump; major facilitator superfamily (MFS) antibiotic efflux pump MgrA, also known as NorR, is a regulator for norA, norB, and tet38. It is a positive regulator for norA expression, but is a direct repressor for norB and an indirect repressor of tet38.
AM990992.1_758 # 806709 # 807875 700.0 743.036 Staphylococcus aureus norA 95.62 ARO:3004667 protein homolog model fluoroquinolone antibiotic antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump NorA gene cloned from Staphylococcus aureus conferred relatively high resistance to hydrophilic quinolones such as norfloxacin, enoxacin, ofloxacin, and ciprofloxacin in S. aureus and Escherichia coli. Had low or no resistance at all to hydrophobic ones such as nalidixic acid, oxolinic acid, and sparfloxacin in S. aureus and Escherichia coli.
AM990992.1_942 # 1001761 # 1003680 300.0 1303.5 tet(M) 98.9 ARO:3000186 protein homolog model tetracycline antibiotic antibiotic target protection tetracycline-resistant ribosomal protection protein Tet(M) is a ribosomal protection protein that confers tetracycline resistance. It is found on transposable DNA elements and its horizontal transfer between bacterial species has been documented.
AM990992.1_1392 # 1491795 # 1493150 880.0 907.901 arlS 99.56 ARO:3000839 protein homolog model fluoroquinolone antibiotic; disinfecting agents and antiseptics antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump ArlS is a protein histidine kinase that phosphorylates ArlR, a promoter for norA expression.
AM990992.1_1393 # 1493147 # 1493806 410.0 442.58 arlR 100.0 ARO:3000838 protein homolog model fluoroquinolone antibiotic; disinfecting agents and antiseptics antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump ArlR is a response regulator that binds to the norA promoter to activate expression. ArlR must first be phosphorylated by ArlS.
AM990992.1_1412 # 1539330 # 1540721 525.0 644.04 norC 70.33 ARO:3007010 protein homolog model fluoroquinolone antibiotic; disinfecting agents and antiseptics antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump NorC is a multidrug efflux pump in Staphylococcus aureus that confers resistance to fluoroquinolones and other structurally unrelated antibiotics like tetracycline. It shares 61% similarity with NorB, and is a structural homolog of Blt of Bacillus subtilis. Like NorA and NorB, NorC is regulated by mgrA, also known as NorR.
AM990992.1_1956 # 2099178 # 2100023 500.0 504.597 PC1 beta-lactamase (blaZ) 95.02 ARO:3000621 protein homolog model penam antibiotic inactivation BlaZ beta-lactamase The blaZ beta-lactamase is found in Bacillus subtilis and Staphylococcus aureus.
AM990992.1_2044 # 2190071 # 2191219 175.0 179.104 vanT gene in vanG cluster 33.6 ARO:3002972 protein homolog model glycopeptide antibiotic antibiotic target alteration glycopeptide resistance gene cluster; vanT Also known as vanTG, is a vanT variant found in the vanG gene cluster.
AM990992.1_2052 # 2198964 # 2201621 1500.0 1779.99 kdpD 98.42 ARO:3004047 protein homolog model aminoglycoside antibiotic antibiotic efflux kdpDE kdpD is a component of the two-component regulatory system, kdpDE. This system is involved in potassium transport and homeostasis, and has been implicated in virulence factor regulation along with kdpE.
AM990992.1_2149 # 2311260 # 2312702 800.0 936.791 Staphylococcus aureus LmrS 97.08 ARO:3004572 protein homolog model macrolide antibiotic; aminoglycoside antibiotic; oxazolidinone antibiotic; diaminopyrimidine antibiotic; phenicol antibiotic antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump MFS transporters are secondary active transporters with single-polypeptide chains containing 400-600 amino acids that transport small solutes across the membrane by using electrochemical gradients. LmrS has 14 transmembrane helices and, when expressed in E. coli, is capable of extruding a variety of antibiotics inclinding linezolid, trimethoprim, florfenicol, chlorampheniocol, erythromycin, streptomycin, kanamycin, and fusidic acid.
AM990992.1_2150 # 2312891 # 2313358 100.0 291.197 sepA 93.55 ARO:3007012 protein homolog model disinfecting agents and antiseptics antibiotic efflux small multidrug resistance (SMR) antibiotic efflux pump sepA is a multidrug efflux pump that confers resistance to disinfecting agents and dyes.
AM990992.1_2151 # 2313486 # 2314829 200.0 732.635 sdrM 87.7 ARO:3007013 protein homolog model fluoroquinolone antibiotic; disinfecting agents and antiseptics antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump sdrM encodes an efflux pump that confers resistance to norfloxacin and ethidium bromide, making this a multidrug resistance gene.
AM990992.1_2418 # 2580364 # 2581764 525.0 533.102 norC 59.18 ARO:3007010 protein homolog model fluoroquinolone antibiotic; disinfecting agents and antiseptics antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump NorC is a multidrug efflux pump in Staphylococcus aureus that confers resistance to fluoroquinolones and other structurally unrelated antibiotics like tetracycline. It shares 61% similarity with NorB, and is a structural homolog of Blt of Bacillus subtilis. Like NorA and NorB, NorC is regulated by mgrA, also known as NorR.
AM990993.1_5 # 3727 # 5106 850.0 892.108 tet(K) 100.0 ARO:3000178 protein homolog model tetracycline antibiotic antibiotic efflux major facilitator superfamily (MFS) antibiotic efflux pump TetK is a tetracycline efflux protein found in both Gram-negative (Haemophilus and Gallibacterium) and Gram-positive (many species, including mycobacteria) bacteria.
AM990992.1_6 # 7005 # 9674 1500.0 1778.07 Staphylococcus aureus gyrA conferring resistance to fluoroquinolones 99.44 ARO:3003296 protein variant model S84L fluoroquinolone antibiotic antibiotic target alteration fluoroquinolone resistant gyrA Point mutation of Staphylococcus aureus gyrA resulted in the lowered affinity between fluoroquinolones and gyrA. Thus, conferring resistance.
AM990992.1_415 # 432645 # 434003 800.0 901.738 Staphylococcus aureus GlpT with mutation conferring resistance to fosfomycin 99.56 ARO:3003901 protein variant model F3I, A100V phosphonic acid antibiotic antibiotic target alteration antibiotic-resistant GlpT Mutations to the active importer GlpT, which is involved with the uptake of many phosphorylated sugars, confer resistance to fosfomycin by reducing import of the drug into the bacteria.
AM990992.1_1332 # 1424853 # 1427255 1400.0 1622.45 Staphylococcus aureus parC conferring resistance to fluoroquinolones 99.62 ARO:3003312 protein variant model S80F fluoroquinolone antibiotic antibiotic target alteration fluoroquinolone resistant parC Point mutation in Staphylococcus aureus parC resulting in fluoroquinolone resistance.
AM990992.1_2074 # 2221194 # 2222459 800.0 847.81 Staphylococcus aureus murA with mutation conferring resistance to fosfomycin 100.0 ARO:3003776 protein variant model D278E, E291D phosphonic acid antibiotic antibiotic target alteration antibiotic-resistant murA transferase murA or UDP-N-acetylglucosamine enolpyruvyl transferase catalyses the initial step in peptidoglycan biosynthesis and is inhibited by fosfomycin. Overexpression of murA through mutations confers fosfomycin resistance.
VF List
Query_id %Identity E-value Related genes VF ID Virulence factor VFcategory VFcategoryID Characteristics Description Strain
AM990992.1_24 94.825 0.0 adsA VF0422 AdsA Immune modulation VFC0258 Harbors two 5'-nucleotidase motifs and a C-terminal LPXTG motif sorting signal (adsA) Adenosine synthase A [AdsA (VF0422) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_125 97.358 0.0 spa VF0017 SpA Exotoxin VFC0235 Belongs to MSCRAMMs family (spa) Immunoglobulin G binding protein A precursor [SpA (VF0017) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_164 64.419 0.0 lap VF0444 Lap Adherence VFC0001 Originally named surface protein p104, is a 104 kDa adhesion protein, present in every Listeria spp. except L. grayi (lap) Listeria adhesion protein Lap [Lap (VF0444) - Adherence (VFC0001)] [Listeria monocytogenes EGD-e] Listeria monocytogenes
AM990992.1_166 99.123 8.81E-167 cap8B VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8B) type 8 capsular polysaccharide synthesis protein Cap8B [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_167 98.425 0.0 cap8C VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8C) type 8 capsular polysaccharide synthesis protein Cap8C [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_168 99.506 0.0 cap8D VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8D) type 8 capsular polysaccharide synthesis protein Cap8D [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_169 100.0 0.0 cap8E VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8E) type 8 capsular polysaccharide synthesis protein Cap8E [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_170 98.645 0.0 cap8F VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8F) type 8 capsular polysaccharide synthesis protein Cap8F [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_171 99.733 0.0 cap8G VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8G) type 8 capsular polysaccharide synthesis protein Cap8G [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_176 98.504 0.0 cap8L VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8L) type 8 capsular polysaccharide synthesis protein Cap8L [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_177 99.459 3.1E-136 cap8M VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8M) type 8 capsular polysaccharide synthesis protein Cap8M [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_178 97.627 0.0 capN VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (capN) capsular polysaccharide type 5/8 biosynthesis epimerase CapN [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_179 98.81 0.0 cap8O VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8O) type 8 capsular polysaccharide synthesis protein Cap8O [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_180 98.688 0.0 cap8P VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8P) type 8 capsular polysaccharide synthesis protein Cap8P [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_181 100.0 6.52E-79 isdI VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdI) staphylobilin-forming heme oxygenase IsdI [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_240 89.58 0.0 coa VF0421 Staphylocoagulase Exoenzyme VFC0251 (coa) staphylocoagulase precursor [Staphylocoagulase (VF0421) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_293 100.0 8.66E-67 esxA VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esxA) type VII secretion system secreted protein EsxA [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_294 99.703 0.0 esaA VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esaA) type VII secretion system protein EsaA [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_295 98.684 8.55E-109 essA VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (essA) type VII secretion system protein EssA, monotopic membrane protein [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_296 100.0 6.11E-54 esaB VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esaB) type VII secretion system protein EsaB [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_297 99.775 0.0 essB VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (essB) type VII secretion system protein EssB, monotopic membrane protein [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_298 82.353 0.0 essC VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (essC) type VII secretion system protein EssC, FtsK/SpoIIIE family ATPase [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_306 86.503 1.12E-104 esaG VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esaG) TIGR01741 family protein [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_307 82.209 4.58E-98 esaG VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esaG) TIGR01741 family protein [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_310 87.5 3.69E-26 esaG VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esaG) TIGR01741 family protein [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_311 84.146 1.34E-48 esaG VF0403 Type VII secretion system Effector delivery system VFC0086 At the molecular level, the S. aureus T7SS is composed of four membrane-associated proteins (EsaA, EssA, EssB, and EssC), three soluble cytosolic proteins (EsaB, EsaE, and EsaG), and five secreted virulence factors (EsxA, EsxC, EsxB, EsxD, and EsaD) (esaG) TIGR01741 family protein [Type VII secretion system (VF0403) - Effector delivery system (VFC0086)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_329 96.899 0.0 geh VF0012 Lipase Exoenzyme VFC0251 Organized as pre-pro-enzymes: the pre-region represents the signal peptide; secreted in the pro-lipase form. The pro-region protects the proteins from proteolytic degradation and acts as an intramolecular chaperone to facilitate translocation of the lipase (geh) glycerol ester hydrolase [Lipase (VF0012) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_486 70.354 4.37E-110 set16 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set16) superantigen-like protein SSL1 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_487 77.682 4.5E-138 set17 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set17) superantigen-like protein SSL2 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_488 65.982 1.1E-144 set19 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set19) superantigen-like protein SSL4 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_489 65.915 7.77E-160 set18 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set18) superantigen-like protein SSL3 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_490 87.179 4.01E-150 set20 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set20) superantigen-like protein SSL5 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_491 82.684 4.39E-139 set22 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set22) superantigen-like protein SSL7 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_492 85.776 4.59E-146 set24 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set24) superantigen-like protein SSL9 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_493 79.295 3.09E-122 set25 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set25) superantigen-like protein SSL10 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_496 77.826 2.26E-124 set26 VF0990 SSLs Exotoxin VFC0235 A family of 14 proteins located on two genomic clusters (set26) superantigen-like protein SSL11 [SSLs (VF0990) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_584 70.0 0.0 clpC VF0072 ClpC Stress survival VFC0282 27-kDa stress protein belongs to the Hsp100/Clp family; Regulation of Clp protease expression is mediated by CtsR, the product of the first gene in the ClpC operon (clpC) endopeptidase Clp ATP-binding chain C [ClpC (VF0072) - Stress survival (VFC0282)] [Listeria monocytogenes EGD-e] Listeria monocytogenes
AM990992.1_607 74.619 0.0 tufA VF0460 EF-Tu Adherence VFC0001 (tufA) elongation factor Tu [EF-Tu (VF0460) - Adherence (VFC0001)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
AM990992.1_620 89.765 0.0 sdrC VF0019 SDr Adherence VFC0001 (sdrC) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_621 81.954 0.0 sdrD VF0019 SDr Adherence VFC0001 (sdrD) Ser-Asp rich fibrinogen-binding bone sialoprotein-binding protein [SDr (VF0019) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_831 77.835 4.73E-114 clpP VF0074 ClpP Stress survival VFC0282 21.6 kDa protein belongs to a family of proteases highly conserved in prokaryotes and eukaryotes (clpP) ATP-dependent Clp protease proteolytic subunit [ClpP (VF0074) - Stress survival (VFC0282)] [Listeria monocytogenes EGD-e] Listeria monocytogenes
AM990992.1_850 91.95 0.0 clfA VF0004 Clumping factor Adherence VFC0001 Belongs to MSCRAMMs family; Ser-Asp rich fibrinogen-binding proteins (the proteins having the SD dipeptide repeats have so far been found only in S. aureus and S. epidermidis); The clfA and clfB genes are not allelic variants but are distinct genes. They are not closely linked, in contrast to the fnbA and fnbB genes (clfA) Clumping factor A, fibrinogen-binding protein [Clumping factor (VF0004) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_852 65.039 0.0 vWbp VF0420 VWbp Exoenzyme VFC0251 (vWbp) secreted von Willebrand factor-binding protein precursor [VWbp (VF0420) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1025 99.083 9.16E-78 sspC VF0006 Staphopain Exoenzyme VFC0251 Staphopains A (encoded by scpA) and B (encoded by sspB) are the major secreted cysteine proteases of S. aureus; A novel type of cysteine proteinase inhibitor, referred as staphostatins (ScpC, SspC), has been recently identified. They specifically inhibit cysteine proteinases (staphopains) (sspC) Staphostatin B [Staphopain (VF0006) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1026 97.71 0.0 sspB VF0006 Staphopain Exoenzyme VFC0251 Staphopains A (encoded by scpA) and B (encoded by sspB) are the major secreted cysteine proteases of S. aureus; A novel type of cysteine proteinase inhibitor, referred as staphostatins (ScpC, SspC), has been recently identified. They specifically inhibit cysteine proteinases (staphopains) (sspB) staphopain cysteine proteinase SspB [Staphopain (VF0006) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1027 93.86 0.0 sspA VF0023 V8 protease Exoenzyme VFC0251 A member of the glutamyl endopeptidase family of enzymes; narrow substrate specificity: cleaving peptide bonds exclusively on the carbonyl side of aspartate and glutamate residues; synthesized as a preproenzyme, the zymogen undergoes proteolytic activation via cleavage by the staphylococcal extracellular metalloprotease; The ssp gene encoding V8 protease is designated as sspA, and is followed by sspB, which encodes a cysteine protease, and sspC, which encodes a protein of unknown function (sspA) serine protease; V8 protease; glutamyl endopeptidase [V8 protease (VF0023) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1105 95.511 0.0 isdB VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdB) iron-regulated surface determinant protein B, haemoglobin receptor [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1106 92.655 0.0 isdA VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdA) iron-regulated surface determinant protein A [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1107 98.678 2.85E-164 isdC VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdC) iron-regulated surface determinant protein C [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1108 96.927 0.0 isdD VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdD) iron-regulated surface determinant protein D [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1109 100.0 0.0 isdE VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdE) iron-regulated surface determinant protein E [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1110 99.688 0.0 isdF VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdF) iron-regulated surface determinant protein F, ATP-binding-cassette-type transmembrane transporter [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1111 98.77 0.0 srtB VF0015 Isd Nutritional/Metabolic factor VFC0272 (srtB) NPQTN specific sortase B [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1112 99.065 3.02E-77 isdG VF0015 Isd Nutritional/Metabolic factor VFC0272 (isdG) iron-regulated surface determinant protein G [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1136 99.06 0.0 hly/hla VF0001 Alpha-hemolysin Exotoxin VFC0235 (hly/hla) Alpha-Hemolysin precursor [Alpha-hemolysin (VF0001) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1207 72.464 9.19E-29 acpXL VF0367 LPS Immune modulation VFC0258 Brucella possesses a non-classical LPS as compared with the so-called classical LPS from enterobacteria such as Escherichia coli. B. abortus lipid A possesses a diaminoglucose backbone (rather than glucosamine), and acyl groups are longer (C28 rather than C12 and C16) and are only linked to the core by amide bounds (rather than ester and amide bonds).; In contrast to enterobacterial LPSs, Brucella LPS is several-hundred-times less active and toxic than E. coli LPS.; this is an evolutionary adaptation to an intracellular lifestyle, low endotoxic activity is shared by other intracellular pathogens such as Bartonella and Legionella. (acpXL) acyl carrier protein [LPS (VF0367) - Immune modulation (VFC0258)] [Brucella melitensis bv. 1 str. 16M] Brucella melitensis
AM990992.1_1310 67.909 0.0 katA VF0454 KatA Stress survival VFC0282 (katA) catalase [KatA (VF0454) - Stress survival (VFC0282)] [Neisseria meningitidis MC58] Neisseria meningitidis
AM990992.1_1455 92.813 0.0 ebp VF0008 EbpS Adherence VFC0001 Belongs to MSCRAMMs family (ebp) cell surface elastin binding protein [EbpS (VF0008) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1552 67.097 0.0 gndA VF0560 Capsule Immune modulation VFC0258 The Klebsiella polysaccharide capsule is produced through a Wzy-dependent process, for which the synthesis and export machinery are encoded in a single 10-30 kb region of the genome known as the K locus.; 78 distinct capsule phenotypes have been recognized by serological typing, but many isolates are serologically non-typable.; capsular serotypes vary substantially in the degree of serum resistance; K1, K2 and K5 are highly serum resistant and are associated with hypervirulent strains that differ from classical K. pneumoniae in that they commonly cause community-acquired disease. (gndA) NADP-dependent phosphogluconate dehydrogenase [Capsule (VF0560) - Immune modulation (VFC0258)] [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Klebsiella pneumoniae
AM990992.1_1601 62.376 9.78E-131 sigA/rpoV VF0257 SigA Regulation VFC0301 In M. tuberculosis, 13 sigma factor genes have been annotated in the genome, 9 of which belong to a special subfamily thought to direct extracytoplasmic functions and various other stress responses (temperature, oxidative stress, pH, and infection of macrophages); sigma A also known as RpoV, is the essential principal mycobacterial sigma factors, necessary for most mycobacterial housekeeping gene transcription; It was the first mycobacterial sigma factor to be associated with virulence (sigA/rpoV) RNA polymerase sigma factor SigA [SigA (VF0257) - Regulation (VFC0301)] [Mycobacterium tuberculosis H37Rv] Mycobacterium tuberculosis
AM990992.1_1756 93.966 0.0 harA VF0015 Isd Nutritional/Metabolic factor VFC0272 (harA) haptoglobin-binding heme uptake protein HarA [Isd (VF0015) - Nutritional/Metabolic factor (VFC0272)] [Staphylococcus aureus subsp. aureus str. Newman] Staphylococcus aureus
AM990992.1_1852 76.42 0.0 hysA VF0013 Hyaluronate lyase Exoenzyme VFC0251 (hysA) hyaluronate lyase precursor [Hyaluronate lyase (VF0013) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1993 81.443 0.0 eap/map VF0016 Eap/Map Adherence VFC0001 Belongs to MSCRAMMs family; unusual property: Eap can bind back to the S. aureus cell wall (eap/map) extracellular adherence protein Eap/Map [Eap/Map (VF0016) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_1994 99.091 0.0 hlb VF0002 Beta-hemolysin Exotoxin VFC0235 (hlb) beta-hemolysin [Beta-hemolysin (VF0002) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus COL] Staphylococcus aureus
AM990992.1_2001 66.856 0.0 groEL VF0594 GroEL Adherence VFC0001 GroEL of numerous bacteria, such as L. pneumophila, H. pylori, H. ducreyi, M. avium, S. typhimurium, A. actinomycetemcomitans and B. burgdorferi, has been shown to be involved in adhesion or invasion of various target cells or tissues. (groEL) chaperonin GroEL [GroEL (VF0594) - Adherence (VFC0001)] [Clostridium difficile 630] Clostridium difficile
AM990992.1_2007 97.727 4.4E-25 hld VF0007 Delta-hemolysin Exotoxin VFC0235 (hld) delta-hemolysin [Delta-hemolysin (VF0007) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2085 60.8 2.63E-174 cap8P VF0003 Capsule Immune modulation VFC0258 Produced by over 90% of Staphylococcus aureus strains. Two serotypes (5 and 8) predominate among clinical isolates of S. aureus from humans (cap8P) type 8 capsular polysaccharide synthesis protein Cap8P [Capsule (VF0003) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2184 88.352 0.0 hysA VF0013 Hyaluronate lyase Exoenzyme VFC0251 (hysA) hyaluronate lyase precursor [Hyaluronate lyase (VF0013) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2267 61.421 1.42E-91 ureG VF0050 Urease Stress survival VFC0282 (ureG) urease accessory protein (ureG) [Urease (VF0050) - Stress survival (VFC0282)] [Helicobacter pylori 26695] Helicobacter pylori
AM990992.1_2392 91.991 0.0 sbi VF0423 Sbi Immune modulation VFC0258 A secreted protein that is also associated with the bacterial envelope, lacks a C-terminal LPXTG sorting signal (sbi) IgG-binding protein SBI [Sbi (VF0423) - Immune modulation (VFC0258)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2394 99.353 0.0 hlgA VF0011 Gamma-hemolysin Exotoxin VFC0235 Three protein (HlgA, HlgB, HlgC) are virtually identical in sequence to leukocidin component S and F, thus gamma-hemolysin may act similarly to leukocidin; S component: HlgA, HlgC. F component: HlgB (hlgA) gamma-hemolysin chain II precursor [Gamma-hemolysin (VF0011) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2395 98.095 0.0 hlgC VF0011 Gamma-hemolysin Exotoxin VFC0235 Three protein (HlgA, HlgB, HlgC) are virtually identical in sequence to leukocidin component S and F, thus gamma-hemolysin may act similarly to leukocidin; S component: HlgA, HlgC. F component: HlgB (hlgC) gamma-hemolysin component C [Gamma-hemolysin (VF0011) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2396 97.538 0.0 hlgB VF0011 Gamma-hemolysin Exotoxin VFC0235 Three protein (HlgA, HlgB, HlgC) are virtually identical in sequence to leukocidin component S and F, thus gamma-hemolysin may act similarly to leukocidin; S component: HlgA, HlgC. F component: HlgB (hlgB) gamma-hemolysin component B [Gamma-hemolysin (VF0011) - Exotoxin (VFC0235)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2471 88.302 0.0 fnbB VF0010 FnBPs Adherence VFC0001 Belongs to MSCRAMMs family; most strains of S. aureus express two related Fn-binding proteins FnBPA and FnBPB, which are encoded by closely linked genes (fnbB) fibronectin-binding protein B [FnBPs (VF0010) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2472 81.941 0.0 fnbB VF0010 FnBPs Adherence VFC0001 Belongs to MSCRAMMs family; most strains of S. aureus express two related Fn-binding proteins FnBPA and FnBPB, which are encoded by closely linked genes (fnbB) fibronectin-binding protein B [FnBPs (VF0010) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2473 85.546 0.0 fnbA VF0010 FnBPs Adherence VFC0001 Belongs to MSCRAMMs family; most strains of S. aureus express two related Fn-binding proteins FnBPA and FnBPB, which are encoded by closely linked genes (fnbA) fibronectin-binding protein A [FnBPs (VF0010) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2597 96.135 2.61E-104 clfB VF0004 Clumping factor Adherence VFC0001 Belongs to MSCRAMMs family; Ser-Asp rich fibrinogen-binding proteins (the proteins having the SD dipeptide repeats have so far been found only in S. aureus and S. epidermidis); The clfA and clfB genes are not allelic variants but are distinct genes. They are not closely linked, in contrast to the fnbA and fnbB genes (clfB) Clumping factor B, adhesin [Clumping factor (VF0004) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2605 93.124 0.0 aur VF0024 Aureolysin Exoenzyme VFC0251 The aur gene encoding aureolysin is present in two allelic forms: type I and type II; low substrate specificity: cleaving peptide bonds on the N-terminal side of bulky, aliphatic, hydrophobic residues (aur) zinc metalloproteinase aureolysin [Aureolysin (VF0024) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2635 100.0 2.31E-134 icaR VF0014 Intercellular adhesion proteins Biofilm VFC0271 IcaA, icaB, icaC, icaD synthesize a polysaccharide, poly-n-succinyl-beta-1,6 glucosamine (PNSG) during infection (icaR) ica operon transcriptional regulator IcaR [Intercellular adhesion proteins (VF0014) - Biofilm (VFC0271)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2636 99.515 0.0 icaA VF0014 Intercellular adhesion proteins Biofilm VFC0271 IcaA, icaB, icaC, icaD synthesize a polysaccharide, poly-n-succinyl-beta-1,6 glucosamine (PNSG) during infection (icaA) N-acetylglucosaminyltransferase, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014) - Biofilm (VFC0271)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2637 100.0 2.55E-70 icaD VF0014 Intercellular adhesion proteins Biofilm VFC0271 IcaA, icaB, icaC, icaD synthesize a polysaccharide, poly-n-succinyl-beta-1,6 glucosamine (PNSG) during infection (icaD) intercellular adhesion protein D, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014) - Biofilm (VFC0271)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2638 98.966 0.0 icaB VF0014 Intercellular adhesion proteins Biofilm VFC0271 IcaA, icaB, icaC, icaD synthesize a polysaccharide, poly-n-succinyl-beta-1,6 glucosamine (PNSG) during infection (icaB) N-deacetylase, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014) - Biofilm (VFC0271)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2639 98.857 0.0 icaC VF0014 Intercellular adhesion proteins Biofilm VFC0271 IcaA, icaB, icaC, icaD synthesize a polysaccharide, poly-n-succinyl-beta-1,6 glucosamine (PNSG) during infection (icaC) intercellular adhesion protein C, involved in polysaccharide intercellular adhesin(PIA) synthesis [Intercellular adhesion proteins (VF0014) - Biofilm (VFC0271)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2640 97.206 0.0 lip VF0012 Lipase Exoenzyme VFC0251 Organized as pre-pro-enzymes: the pre-region represents the signal peptide; secreted in the pro-lipase form. The pro-region protects the proteins from proteolytic degradation and acts as an intramolecular chaperone to facilitate translocation of the lipase (lip) triacylglycerol lipase precursor [Lipase (VF0012) - Exoenzyme (VFC0251)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus
AM990992.1_2658 97.464 0.0 cna VF0005 CNA Adherence VFC0001 Belongs to MSCRAMMs family (cna) collagen adhesin precursor [CNA (VF0005) - Adherence (VFC0001)] [Staphylococcus aureus subsp. aureus MW2] Staphylococcus aureus