Basic Information
Accession number
GCA_000013505.1
Release date
2006-05-04
Organism
Streptococcus pyogenes MGAS10270
Species name
Streptococcus pyogenes

Assembly level
Complete Genome
Assembly name
ASM1350v1
Assembly submitter
Laboratory of Human Bacterial Pathogenesis, Rocky Mountain Laboratories, National Institute of Allergy and Infectious Disease, National Institutes of Health
Assembly Type
haploid
Genome size
1.9 Mb
GC percent
38.5
Contig count
1

Collection date
-
Sample location
-
Host
-
Isolation source
-
Isolate type
-
Strain
MGAS10270
Isolate
-
ARG List
ORF_ID Pass_Bitscore Best_Hit_Bitscore Best_Hit_ARO Best_Identities ARO Model_type SNPs_in_Best_Hit_ARO Other_SNPs Drug class Resistance mechanism AMR gene family Description
CP000260.1_186 # 205178 # 206884 750.0 765.377 patA 65.25 ARO:3000024 protein homolog model fluoroquinolone antibiotic antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump PatA is an ABC transporter of Streptococcus pneumoniae that interacts with PatB to confer fluoroquinolone resistance.
CP000260.1_187 # 206887 # 208671 750.0 832.017 patB 66.78 ARO:3000025 protein homolog model fluoroquinolone antibiotic antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump PatB is an ABC transporter of Streptococcus pneumoniae that interacts with PatA to confer fluoroquinolone resistance..
CP000260.1_1495 # 1510203 # 1510946 50.0 100.523 vanY gene in vanB cluster 35.14 ARO:3002956 protein homolog model glycopeptide antibiotic antibiotic target alteration vanY; glycopeptide resistance gene cluster Also known as vanYB, is a vanY variant found in the vanB gene cluster.
VF List
Query_id %Identity E-value Related genes VF ID Virulence factor VFcategory VFcategoryID Characteristics Description Strain
CP000260.1_107 92.157 0.0 GBS_RS03570 VF0527 PI-1 Adherence VFC0001 The genes encoding pili are located within 2 distinct loci, denoted pilus islands 1 and 2 (PI-1 and PI-2), the latter having 2 allelic variants (PI-2a and PI-2b); Each pilus island (PI) comprises 3 genes that encode structural proteins with a characteristic LPXTG anchoring motif recognised by sortase transpeptidases: backbone (Bkb) subunit (forming the polymeric shaft of the pilus), ancillary subunit 1 (An1, the functional tip), and ancillary subunit 2 (An2, the C-terminal anchor following attachment to peptidoglycan in the cell wall by sortase A) (GBS_RS03570) LPXTG cell wall anchor domain-containing protein [PI-1 (VF0527) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_108 89.508 0.0 srtC1 VF0527 PI-1 Adherence VFC0001 The genes encoding pili are located within 2 distinct loci, denoted pilus islands 1 and 2 (PI-1 and PI-2), the latter having 2 allelic variants (PI-2a and PI-2b); Each pilus island (PI) comprises 3 genes that encode structural proteins with a characteristic LPXTG anchoring motif recognised by sortase transpeptidases: backbone (Bkb) subunit (forming the polymeric shaft of the pilus), ancillary subunit 1 (An1, the functional tip), and ancillary subunit 2 (An2, the C-terminal anchor following attachment to peptidoglycan in the cell wall by sortase A) (srtC1) class C sortase [PI-1 (VF0527) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_109 86.926 2.17E-177 srtC2 VF0527 PI-1 Adherence VFC0001 The genes encoding pili are located within 2 distinct loci, denoted pilus islands 1 and 2 (PI-1 and PI-2), the latter having 2 allelic variants (PI-2a and PI-2b); Each pilus island (PI) comprises 3 genes that encode structural proteins with a characteristic LPXTG anchoring motif recognised by sortase transpeptidases: backbone (Bkb) subunit (forming the polymeric shaft of the pilus), ancillary subunit 1 (An1, the functional tip), and ancillary subunit 2 (An2, the C-terminal anchor following attachment to peptidoglycan in the cell wall by sortase A) (srtC2) class C sortase [PI-1 (VF0527) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_110 93.363 0.0 GBS_RS03585 VF0527 PI-1 Adherence VFC0001 The genes encoding pili are located within 2 distinct loci, denoted pilus islands 1 and 2 (PI-1 and PI-2), the latter having 2 allelic variants (PI-2a and PI-2b); Each pilus island (PI) comprises 3 genes that encode structural proteins with a characteristic LPXTG anchoring motif recognised by sortase transpeptidases: backbone (Bkb) subunit (forming the polymeric shaft of the pilus), ancillary subunit 1 (An1, the functional tip), and ancillary subunit 2 (An2, the C-terminal anchor following attachment to peptidoglycan in the cell wall by sortase A) (GBS_RS03585) tip adhesin protein [PI-1 (VF0527) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_111 64.356 3.31E-42 srtC1 VF0527 PI-1 Adherence VFC0001 The genes encoding pili are located within 2 distinct loci, denoted pilus islands 1 and 2 (PI-1 and PI-2), the latter having 2 allelic variants (PI-2a and PI-2b); Each pilus island (PI) comprises 3 genes that encode structural proteins with a characteristic LPXTG anchoring motif recognised by sortase transpeptidases: backbone (Bkb) subunit (forming the polymeric shaft of the pilus), ancillary subunit 1 (An1, the functional tip), and ancillary subunit 2 (An2, the C-terminal anchor following attachment to peptidoglycan in the cell wall by sortase A) (srtC1) class C sortase [PI-1 (VF0527) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_112 66.929 2.05E-128 srtC2 VF0527 PI-1 Adherence VFC0001 The genes encoding pili are located within 2 distinct loci, denoted pilus islands 1 and 2 (PI-1 and PI-2), the latter having 2 allelic variants (PI-2a and PI-2b); Each pilus island (PI) comprises 3 genes that encode structural proteins with a characteristic LPXTG anchoring motif recognised by sortase transpeptidases: backbone (Bkb) subunit (forming the polymeric shaft of the pilus), ancillary subunit 1 (An1, the functional tip), and ancillary subunit 2 (An2, the C-terminal anchor following attachment to peptidoglycan in the cell wall by sortase A) (srtC2) class C sortase [PI-1 (VF0527) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_139 98.949 0.0 slo VF0250 SLO Exotoxin VFC0235 A member of the cholesterol-dependent cytolysin family, related to pneumolysin from S. pneumoniae (slo) streptolysin O precursor [SLO (VF0250) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_178 99.573 1.6E-173 speG VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (speG) streptococcal exotoxin G precursor [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_183 90.604 0.0 hasC VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasC) UTP--glucose-1-phosphate uridylyltransferase HasC [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_309 61.979 5.69E-88 clpP VF0074 ClpP Stress survival VFC0282 21.6 kDa protein belongs to a family of proteases highly conserved in prokaryotes and eukaryotes (clpP) ATP-dependent Clp protease proteolytic subunit [ClpP (VF0074) - Stress survival (VFC0282)] [Listeria monocytogenes EGD-e] Listeria monocytogenes
CP000260.1_347 76.299 5.61E-175 psaA VF0151 PsaA Nutritional/Metabolic factor VFC0272 Surface protein: lipid-attached; AdcABC is another ABC transporter for Zn2+ uptake (psaA) manganese ABC transporter, manganese-binding adhesion liprotein [PsaA (VF0151) - Nutritional/Metabolic factor (VFC0272)] [Streptococcus pneumoniae TIGR4] Streptococcus pneumoniae
CP000260.1_467 69.697 0.0 tufA VF0460 EF-Tu Adherence VFC0001 (tufA) elongation factor Tu [EF-Tu (VF0460) - Adherence (VFC0001)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
CP000260.1_563 99.574 4.34E-172 speC VF0248 Spes Exotoxin VFC0235 Two prototypical streptococcal superantigens, SpeA and SpeC are both encoded on functional phage (speC) streptococcal exotoxin C precursor, phage associated [Spes (VF0248) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_564 100.0 0.0 mf2 VF0252 Mitogenic factor Exoenzyme VFC0251 DNase B has been shown to be the same molecule as the streptococcal mitogenic factor (MF). It does not contribute significantly to the superantigenic activity of S. pyogenes when compared with other Spes (mf2) deoxyribonuclease, phage associated [Mitogenic factor (VF0252) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_581 100.0 8.81E-33 sagA VF0251 SLS Exotoxin VFC0235 Oxygen stable, most potent cytotoxin; not immunogenic; unstable polypeptide bounds to carrier molecules, such as serum albumin, RNA core, or lipoteichoic acid; responsible for the beta-hemolysis surrounding colonies of GAS grown on blood agar plates; SagA serves as SLS toxin precursor and eight additional genes in an operon is required for toxin maturation and export. pro-SLS is converted into an active cytolysin by the actions of SagBCD, a trimeric oxazole/thiazole synthetase. (sagA) streptolysin S associated protein [SLS (VF0251) - Exotoxin (VFC0235)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_685 84.164 0.0 ideS/mac VF0284 IdeS Immune modulation VFC0258 A secreted 35 kDa protein, does not require processing or activation to exert its enzymatic activity; also described as a CD11b homolog protein, Mac, CD11b is the alpha chain of complement receptor 3 (CR3), which is the receptor on phagocytes that recognizes C3b (ideS/mac) immunoglobulin G-degrading enzyme [IdeS (VF0284) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_748 65.862 1.75E-142 wbtL VF0542 LPS Immune modulation VFC0258 The structure of Francisella spp. lipid A is unique in that it is modified by various carbohydrates that greatly reduce TLR4 activation and allow for immune evasion (wbtL) glucose-1-phosphate thymidylyltransferase [LPS (VF0542) - Immune modulation (VFC0258)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
CP000260.1_805 100.0 0.0 mf3 VF0252 Mitogenic factor Exoenzyme VFC0251 DNase B has been shown to be the same molecule as the streptococcal mitogenic factor (MF). It does not contribute significantly to the superantigenic activity of S. pyogenes when compared with other Spes (mf3) deoxyribonuclease [Mitogenic factor (VF0252) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_810 99.818 0.0 fbp54 VF0243 FBPs Adherence VFC0001 Surface protein: linked to the bacterial cell wall via C-terminal LPXTG motif; including PrtF1 (protein F1) also known as SfbI (streptococcal fibronectin binding proteinI), SfbII/SOF (serum opacity factor), FbaA, FbaB, FBP54 (fibronectin-binding protein 54), protein F2, PFBP (pyogene fibronectin-binding protein) (fbp54) fibronectin-bing protein Fbp54 [FBPs (VF0243) - Adherence (VFC0001)] [Streptococcus pyogenes MGAS6180] Streptococcus pyogenes
CP000260.1_824 98.509 0.0 hylA VF0246 Hyaluronidase Exoenzyme VFC0251 GAS are capable of producing two types of hyaluronidase, a bacteriophage associated enzyme and an extracellular hyaluronidase that is secreted from the cell; since the capsule of GAS is composed solely of hyaluronic acid, the hyaluronidase presumably benefits the phage by aiding in capsule penetration during its infection of or release from streptococci (hylA) hyaluronidase [Hyaluronidase (VF0246) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_842 62.308 8.61E-56 msrA/B(pilB VF0456 MsrAB Stress survival VFC0282 Methionine sulfoxide reductases (Msr) are enzymes that catalyze the reduction of free and protein-bound methionine sulfoxide (MetSO) back to Met. Two structurally unrelated classes of Msrs have been described so far. MsrAs are stereo specific toward the S isomer on the sulfur of the sulfoxide function, whereas MsrBs are specific toward the R isomer (msrA/B(pilB)) trifunctional thioredoxin/methionine sulfoxide reductase A/B protein [MsrAB (VF0456) - Stress survival (VFC0282)] [Neisseria meningitidis MC58] Neisseria meningitidis
CP000260.1_1034 60.7 6.81E-107 cfa/cfb VF0280 CAMP factor Exotoxin VFC0235 CAMP factor, a pore-forming protein toxin of ~24 kDa gives rise to the so-called CAMP reaction, which consists of a zone of strong hemolysis that is observed when S. agalactiae is streaked next to Staphylococcus aureus on sheep blood agar. S. aureus secretes sphingomyelinase. Sheep red blood cells are rich in sphingomyelin and, upon exposure to sphingomyelinase, become greatly sensitized to CAMP factor, which then effects hemolysis. This co-hemolytic phenomenon was first described by Christie, Atkins, and Munch-Petersen, and the CAMP acronym represents these investigators' last names.; Paralogs of <iS. agalactiae</i> CAMP factor genes have been sequenced in a wide range of Gram-positive pathogens, including Streptococcus uberisand Cutibacterium acnes (cfa/cfb) cAMP factor [CAMP factor (VF0280) - Exotoxin (VFC0235)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_1663 78.182 0.0 ska VF0247 Streptokinase Exoenzyme VFC0251 (ska) streptokinase A precursor [Streptokinase (VF0247) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1689 100.0 0.0 lmb VF0275 Lmb Adherence VFC0001 Lmb is an extracellular protein that was first identified in S. agalactiae. Homologs of this protein were reported in S. pyogenes and S. pneumonia and termed Lbp and AdcAII, respectively (lmb) laminin-binding surface protein [Lmb (VF0275) - Adherence (VFC0001)] [Streptococcus agalactiae NEM316] Streptococcus agalactiae
CP000260.1_1690 81.771 0.0 fbaA VF0243 FBPs Adherence VFC0001 Surface protein: linked to the bacterial cell wall via C-terminal LPXTG motif; including PrtF1 (protein F1) also known as SfbI (streptococcal fibronectin binding proteinI), SfbII/SOF (serum opacity factor), FbaA, FbaB, FBP54 (fibronectin-binding protein 54), protein F2, PFBP (pyogene fibronectin-binding protein) (fbaA) protein F2 like fibronectin-binding protein [FBPs (VF0243) - Adherence (VFC0001)] [Streptococcus pyogenes MGAS6180] Streptococcus pyogenes
CP000260.1_1691 97.883 0.0 scpA/scpB VF0245 C5a peptidase Adherence VFC0001 Surface protein: LPTTN motif (scpA/scpB) streptococcal C5a peptidase [C5a peptidase (VF0245) - Adherence (VFC0001)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1705 89.831 0.0 sfbX VF0243 FBPs Adherence VFC0001 Surface protein: linked to the bacterial cell wall via C-terminal LPXTG motif; including PrtF1 (protein F1) also known as SfbI (streptococcal fibronectin binding proteinI), SfbII/SOF (serum opacity factor), FbaA, FbaB, FBP54 (fibronectin-binding protein 54), protein F2, PFBP (pyogene fibronectin-binding protein) (sfbX) LPXTG cell wall anchor domain-containing protein [FBPs (VF0243) - Adherence (VFC0001)] [Streptococcus pyogenes MGAS6180] Streptococcus pyogenes
CP000260.1_1706 63.327 0.0 sfbII/sof VF0243 FBPs Adherence VFC0001 Surface protein: linked to the bacterial cell wall via C-terminal LPXTG motif; including PrtF1 (protein F1) also known as SfbI (streptococcal fibronectin binding proteinI), SfbII/SOF (serum opacity factor), FbaA, FbaB, FBP54 (fibronectin-binding protein 54), protein F2, PFBP (pyogene fibronectin-binding protein) (sfbII/sof) serum opacification factor [FBPs (VF0243) - Adherence (VFC0001)] [Streptococcus pyogenes MGAS6180] Streptococcus pyogenes
CP000260.1_1710 99.497 0.0 speB VF0249 SpeB Exoenzyme VFC0251 (speB) pyrogenic exotoxin B [SpeB (VF0249) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1713 100.0 0.0 mf/spd VF0252 Mitogenic factor Exoenzyme VFC0251 DNase B has been shown to be the same molecule as the streptococcal mitogenic factor (MF). It does not contribute significantly to the superantigenic activity of S. pyogenes when compared with other Spes (mf/spd) deoxyribonuclease [Mitogenic factor (VF0252) - Exoenzyme (VFC0251)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1733 67.238 0.0 groEL VF0594 GroEL Adherence VFC0001 GroEL of numerous bacteria, such as L. pneumophila, H. pylori, H. ducreyi, M. avium, S. typhimurium, A. actinomycetemcomitans and B. burgdorferi, has been shown to be involved in adhesion or invasion of various target cells or tissues. (groEL) chaperonin GroEL [GroEL (VF0594) - Adherence (VFC0001)] [Clostridium difficile 630] Clostridium difficile
CP000260.1_1873 99.523 0.0 hasA VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasA) hyaluronan synthase HasA [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1874 100.0 0.0 hasB VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasB) UDP-glucose 6-dehydrogenase HasB [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1875 100.0 1.75E-52 hasB VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasB) UDP-glucose 6-dehydrogenase HasB [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes
CP000260.1_1876 99.342 0.0 hasC VF0244 Hyaluronic acid capsule Immune modulation VFC0258 (hasC) UTP--glucose-1-phosphate uridylyltransferase HasC [Hyaluronic acid capsule (VF0244) - Immune modulation (VFC0258)] [Streptococcus pyogenes M1 GAS] Streptococcus pyogenes