2. PATHOGENS
Basic Information
Accession number
GCA_001244315.1
Release date
2015-08-05
Organism
Vibrio parahaemolyticus
Species name
Vibrio parahaemolyticus
Assembly level
Complete Genome
Assembly name
ASM124431v1
Assembly submitter
Food-borne Pathogen Omics Research Center, FORC
Assembly Type
haploid
Genome size
5.0 Mb
GC percent
45.5
Contig count
2
Collection date
2014-03-27
Sample location
South Korea: Gyeongnam
Host
finespotted flounder
Isolation source
-
Isolate type
-
Strain
FORC_008
Isolate
-
ARG List
ORF_ID Pass_Bitscore Best_Hit_Bitscore Best_Hit_ARO Best_Identities ARO Model_type SNPs_in_Best_Hit_ARO Other_SNPs Drug class Resistance mechanism AMR gene family Description
CP009982.1_228 # 289736 # 290368 400.0 418.313 CRP 95.24 ARO:3000518 protein homolog model macrolide antibiotic; fluoroquinolone antibiotic; penam antibiotic efflux resistance-nodulation-cell division (RND) antibiotic efflux pump CRP is a global regulator that represses MdtEF multidrug efflux pump expression.
CP009982.1_284 # 346454 # 347539 175.0 184.882 vanT gene in vanG cluster 33.24 ARO:3002972 protein homolog model glycopeptide antibiotic antibiotic target alteration glycopeptide resistance gene cluster; vanT Also known as vanTG, is a vanT variant found in the vanG gene cluster.
CP009982.1_464 # 558344 # 558541 100.0 102.064 rsmA 90.91 ARO:3005069 protein homolog model fluoroquinolone antibiotic; diaminopyrimidine antibiotic; phenicol antibiotic antibiotic efflux resistance-nodulation-cell division (RND) antibiotic efflux pump rsmA is a gene that regulates virulence of Pseudomonas aeruginosa. However, its negative effect on MexEF-OprN overexpression has been noted to confer resistance to various antibiotics. It's Escherichia coli homolog is csrA.
CP009982.1_1838 # 2078017 # 2078973 400.0 535.798 TxR 86.29 ARO:3005008 protein homolog model tetracycline antibiotic antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump TxR is a putative transcription regulator that plays a role in conferring tetracycline resistance. It is required for proper functioning of Tet35.
CP009982.1_1840 # 2081627 # 2083228 710.0 719.539 tet(35) 95.12 ARO:3000481 protein homolog model tetracycline antibiotic antibiotic efflux ATP-binding cassette (ABC) antibiotic efflux pump Tet35 is a tetracycline efflux pump found in the Gram-negative Vibrio and Stenotrophomonas. It is unrelated to other tet resistance genes.
CP009983.1_445 # 466954 # 470094 750.0 828.165 adeF 43.92 ARO:3000777 protein homolog model fluoroquinolone antibiotic; tetracycline antibiotic antibiotic efflux resistance-nodulation-cell division (RND) antibiotic efflux pump AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH.
CP009983.1_451 # 474929 # 475780 500.0 585.104 CARB-18 100.0 ARO:3003174 protein homolog model penam antibiotic inactivation CARB beta-lactamase CARB-18 is a beta-lactamase. Name originally from the historical Lahey list of beta-lactamases, some of which did not include sequence data.
CP009983.1_1170 # 1281772 # 1284924 750.0 793.497 adeF 42.59 ARO:3000777 protein homolog model fluoroquinolone antibiotic; tetracycline antibiotic antibiotic efflux resistance-nodulation-cell division (RND) antibiotic efflux pump AdeF is the membrane fusion protein of the multidrug efflux complex AdeFGH.
CP009982.1_2486 # 2824749 # 2826542 500.0 518.85 Haemophilus influenzae PBP3 conferring resistance to beta-lactam antibiotics 46.35 ARO:3004446 protein variant model S385T cephalosporin; cephamycin; penam antibiotic target alteration Penicillin-binding protein mutations conferring resistance to beta-lactam antibiotics PBP3 is a penicillin-binding protein and beta-lactam resistance enzyme encoded by the ftsI gene in Haemophilus influenzae. Mutations in ftsI confer resistance to beta-lactam antibiotics.
CP009982.1_2506 # 2845548 # 2847428 1000.0 1059.28 Escherichia coli parE conferring resistance to fluoroquinolones 78.82 ARO:3003316 protein variant model D476N fluoroquinolone antibiotic antibiotic target alteration fluoroquinolone resistant parE Point mutation in Escherichia coli parE resulting in fluoroquinolones resistance.
VF List
Query_id %Identity E-value Related genes VF ID Virulence factor VFcategory VFcategoryID Characteristics Description Strain
CP009982.1_115 77.919 0.0 tufA VF0460 EF-Tu Adherence VFC0001 (tufA) elongation factor Tu [EF-Tu (VF0460) - Adherence (VFC0001)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
CP009982.1_175 74.811 0.0 htpB VF0159 Hsp60 Adherence VFC0001 (htpB) Hsp60, 60K heat shock protein HtpB [Hsp60 (VF0159) - Adherence (VFC0001)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Legionella pneumophila
CP009982.1_213 85.308 8.85E-135 motX VF0519 Flagella Motility VFC0204 Single polar flagellum (motX) sodium-type flagellar protein MotX [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_228 66.337 7.45E-101 vfr VF0082 Type IV pili Adherence VFC0001 PilA, B, C, D, E, F, M, N, O, P, Q, T, U, V, W, X, Y1, Y2, Z, and fimT, U, V are involved in the biogenesis and mechanical function of pili, pilG, H, I, K, chpA, B, C, D, E, pilS, R, fimS, rpoN, algR, algU, and vfr are involved in transcriptional regulation and chemosensory pathways that control the expression or activity of the twitching motility of the pili (vfr) cAMP-regulatory protein [Type IV pili (VF0082) - Adherence (VFC0001)] [Pseudomonas aeruginosa PAO1] Pseudomonas aeruginosa
CP009982.1_249 77.919 0.0 tufA VF0460 EF-Tu Adherence VFC0001 (tufA) elongation factor Tu [EF-Tu (VF0460) - Adherence (VFC0001)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
CP009982.1_277 64.865 5.17E-100 rpe VF0543 Capsule Immune modulation VFC0258 Group 4 capsule; high molecular weight (HMW) O-antigen capsule (rpe) ribulose-phosphate 3-epimerase [Capsule (VF0543) - Immune modulation (VFC0258)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
CP009982.1_307 61.997 0.0 mshH VF0515 MSHA pili Adherence VFC0001 (mshH) MSHA biogenesis protein MshH [MSHA pili (VF0515) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_311 68.271 0.0 mshL VF0515 MSHA pili Adherence VFC0001 (mshL) MSHA biogenesis protein MshL [MSHA pili (VF0515) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_312 61.922 1.49E-130 mshM VF0515 MSHA pili Adherence VFC0001 (mshM) MSHA biogenesis protein MshM [MSHA pili (VF0515) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_314 77.583 0.0 mshE VF0515 MSHA pili Adherence VFC0001 (mshE) MSHA biogenesis protein MshE [MSHA pili (VF0515) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_315 71.253 0.0 mshG VF0515 MSHA pili Adherence VFC0001 (mshG) MSHA biogenesis protein MshG [MSHA pili (VF0515) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_399 74.481 0.0 tapT VF0475 Tap type IV pili Adherence VFC0001 Polar; similar to the P. aeruginosa Pil system; constitutively expressed (tapT) twitching ATPase [Tap type IV pili (VF0475) - Adherence (VFC0001)] [Aeromonas hydrophila ML09-119] Aeromonas hydrophila
CP009982.1_433 64.398 3.13E-91 algU VF0091 Alginate Biofilm VFC0271 Alginate production is frequently referred to as mucoidy because colonies producing alginate have a wet glistening (mucoid) appearance, which is very different from that of colonies not producing alginate; most of the alginate biosynthetic genes are clustered in the algD operon; Alginate production is highly regulated. Regulatory genes are located in two areas far removed from the biosynthetic genes, with one exception algC (algU) alginate biosynthesis protein AlgZ/FimS [Alginate (VF0091) - Biofilm (VFC0271)] [Pseudomonas aeruginosa PAO1] Pseudomonas aeruginosa
CP009982.1_457 75.949 9.28E-171 rpoS VF0112 RpoS Regulation VFC0301 (rpoS) RNA polymerase sigma factor RpoS [RpoS (VF0112) - Regulation (VFC0301)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Salmonella enterica (serovar typhimurium)
CP009982.1_464 76.271 2.22E-30 csrA VF0261 CsrA Regulation VFC0301 Belongs to a highly conserved family of global regulators that typically control stationary phase traits post-transcriptionally (csrA) carbon storage regulator CsrA [CsrA (VF0261) - Regulation (VFC0301)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Legionella pneumophila
CP009982.1_473 88.889 3.2E-118 luxS VF0406 AI-2 Biofilm VFC0271 AI-2 is produced and detected by a wide variety of bacteria and is presumed to facilitate interspecies communications. (luxS) S-ribosylhomocysteinase [AI-2 (VF0406) - Biofilm (VFC0271)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_484 73.611 1.02E-156 pilD/vcpD VF0609 ChiRP Adherence VFC0001 Also known as PilA pilus (pilD/vcpD) A24 family peptidase [ChiRP (VF0609) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio vulnificus
CP009982.1_485 74.321 0.0 pilC VF0609 ChiRP Adherence VFC0001 Also known as PilA pilus (pilC) type II secretion system F family protein [ChiRP (VF0609) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio vulnificus
CP009982.1_486 73.843 0.0 pilB VF0609 ChiRP Adherence VFC0001 Also known as PilA pilus (pilB) type IV-A pilus assembly ATPase PilB [ChiRP (VF0609) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio vulnificus
CP009982.1_541 74.432 1.92E-165 ompU VF0514 OmpU Adherence VFC0001 Conserved major outer membrane porin, widely present in pathogenic vibrio (ompU) outer membrane protein OmpU [OmpU (VF0514) - Adherence (VFC0001)] [Vibrio vulnificus CMCP6] Vibrio vulnificus
CP009982.1_606 60.714 1.32E-153 galE VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (galE) UDP-glucose 4-epimerase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_697 61.947 1.81E-150 lpxD VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (lpxD) UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_721 80.526 3.87E-114 gmhA/lpcA VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (gmhA/lpcA) phosphoheptose isomerase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_747 74.734 0.0 flaE VF0519 Flagella Motility VFC0204 Single polar flagellum (flaE) secreted flagellin involved in biofilm formation [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_748 84.127 0.0 flaD VF0519 Flagella Motility VFC0204 Single polar flagellum (flaD) flagellin [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_749 82.713 0.0 flaB VF0519 Flagella Motility VFC0204 Single polar flagellum (flaB) flagellin [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_751 64.732 0.0 fliD VF0519 Flagella Motility VFC0204 Single polar flagellum (fliD) flagellar hook-associated protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_753 86.765 9.18E-88 fliS VF0519 Flagella Motility VFC0204 Single polar flagellum (fliS) flagellar protein FliS [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_755 78.893 0.0 flrA VF0519 Flagella Motility VFC0204 Single polar flagellum (flrA) sigma-54 dependent transcriptional activator [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_756 84.29 0.0 fleS/flrB VF0519 Flagella Motility VFC0204 Single polar flagellum (fleS/flrB) sensory box sensor histidine kinase [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_757 84.034 0.0 fleR/flrC VF0519 Flagella Motility VFC0204 Single polar flagellum (fleR/flrC) sigma-54 dependent response regulator [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_758 75.728 1.15E-55 fliE VF0519 Flagella Motility VFC0204 Single polar flagellum (fliE) flagellar hook-basal body protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_759 81.443 0.0 fliF VF0519 Flagella Motility VFC0204 Single polar flagellum (fliF) flagellar M-ring protein FliF [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_760 86.994 0.0 fliG VF0519 Flagella Motility VFC0204 Single polar flagellum (fliG) flagellar motor protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_761 69.925 3.86E-141 fliH VF0519 Flagella Motility VFC0204 Single polar flagellum (fliH) flagellar assembly protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_762 91.304 0.0 fliI VF0519 Flagella Motility VFC0204 Single polar flagellum (fliI) flagellum-specific ATP synthase [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_763 68.531 1.2E-72 fliJ VF0519 Flagella Motility VFC0204 Single polar flagellum (fliJ) flagellar protein FliJ [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_765 75.595 3.11E-89 fliL VF0519 Flagella Motility VFC0204 Single polar flagellum (fliL) flagellar basal body-associated protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_766 87.536 0.0 fliM VF0519 Flagella Motility VFC0204 Single polar flagellum (fliM) flagellar motor switch protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_767 88.971 2.05E-85 fliN VF0519 Flagella Motility VFC0204 Single polar flagellum (fliN) flagellar motor switch protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_768 65.766 1.19E-41 fliO VF0519 Flagella Motility VFC0204 Single polar flagellum (fliO) flagellar protein FliO [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_769 79.779 1.37E-150 fliP VF0519 Flagella Motility VFC0204 Single polar flagellum (fliP) flagellar biosynthesis protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_770 84.27 3.09E-53 fliQ VF0519 Flagella Motility VFC0204 Single polar flagellum (fliQ) flagellar biosynthesis protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_771 78.462 7.77E-157 fliR VF0519 Flagella Motility VFC0204 Single polar flagellum (fliR) flagellar biosynthesis protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_772 82.447 0.0 flhB VF0519 Flagella Motility VFC0204 Single polar flagellum (flhB) flagellar biosynthesis protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_773 90.415 0.0 flhA VF0519 Flagella Motility VFC0204 Single polar flagellum (flhA) flagellar biosynthesis protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_774 74.9 0.0 flhF VF0519 Flagella Motility VFC0204 Single polar flagellum (flhF) flagellar biosynthesis protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_775 91.864 0.0 fleN/flhG VF0519 Flagella Motility VFC0204 Single polar flagellum (fleN/flhG) MinD-like ATPase [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_776 82.787 4.45E-155 fliA VF0519 Flagella Motility VFC0204 Single polar flagellum (fliA) flagellar biosynthesis sigma factor FliA [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_777 97.541 3.12E-85 cheY VF0519 Flagella Motility VFC0204 Single polar flagellum (cheY) chemotaxis protein CheY [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_778 69.106 4.83E-120 cheZ VF0519 Flagella Motility VFC0204 Single polar flagellum (cheZ) chemotaxis protein CheZ [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_779 72.613 0.0 cheA VF0519 Flagella Motility VFC0204 Single polar flagellum (cheA) chemotaxis protein CheA [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_780 84.085 0.0 cheB VF0519 Flagella Motility VFC0204 Single polar flagellum (cheB) chemotaxis-specific methylesterase [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_781 62.302 4.57E-121 AHML_RS07540 VF0473 Polar flagella Motility VFC0204 Types of bacterial movement: swimming, swarming, gliding, twitching and sliding. Only swimming and swarming are correlated with the presence of flagella. Swimming is an individual endeavour, while swarming is the movement of a group of bacteria; constitutively expressed for motility in liquid environments (AHML_RS07540) CobQ/CobB/MinD/ParA family protein [Polar flagella (VF0473) - Motility (VFC0204)] [Aeromonas hydrophila ML09-119] Aeromonas hydrophila
CP009982.1_783 92.683 4.69E-111 cheW VF0519 Flagella Motility VFC0204 Single polar flagellum (cheW) purine-binding chemotaxis protein CheW [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_873 66.146 2.5E-98 sodB VF0169 SodB Stress survival VFC0282 (sodB) superoxide dismutase [SodB (VF0169) - Stress survival (VFC0282)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Legionella pneumophila
CP009982.1_878 78.644 1.0E-176 motY VF0519 Flagella Motility VFC0204 Single polar flagellum (motY) sodium-type flagellar protein MotY [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_934 77.049 8.19E-138 flmH VF0473 Polar flagella Motility VFC0204 Types of bacterial movement: swimming, swarming, gliding, twitching and sliding. Only swimming and swarming are correlated with the presence of flagella. Swimming is an individual endeavour, while swarming is the movement of a group of bacteria; constitutively expressed for motility in liquid environments (flmH) short chain dehydrogenase/reductase family oxidoreductase [Polar flagella (VF0473) - Motility (VFC0204)] [Aeromonas hydrophila ML09-119] Aeromonas hydrophila
CP009982.1_935 63.636 5.92E-29 acpXL VF0367 LPS Immune modulation VFC0258 Brucella possesses a non-classical LPS as compared with the so-called classical LPS from enterobacteria such as Escherichia coli. B. abortus lipid A possesses a diaminoglucose backbone (rather than glucosamine), and acyl groups are longer (C28 rather than C12 and C16) and are only linked to the core by amide bounds (rather than ester and amide bonds).; In contrast to enterobacterial LPSs, Brucella LPS is several-hundred-times less active and toxic than E. coli LPS.; this is an evolutionary adaptation to an intracellular lifestyle, low endotoxic activity is shared by other intracellular pathogens such as Bartonella and Legionella. (acpXL) acyl carrier protein [LPS (VF0367) - Immune modulation (VFC0258)] [Brucella melitensis bv. 1 str. 16M] Brucella melitensis
CP009982.1_1250 97.708 0.0 vpadF VF0578 VpadF Adherence VFC0001 (vpadF) surface adhesin VpadF [VpadF (VF0578) - Adherence (VFC0001)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1314 99.324 1.59E-107 vxsC VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vxsC) transcriptional regulator ExsC [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1315 97.826 3.3E-98 virG VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (virG) Type III secretion system chaperone VscW [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1316 100.0 0.0 exsA VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (exsA) transcriptional regulator ExsA [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1317 98.773 0.0 exsD VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (exsD) transcriptional regulator ExsD [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1318 97.887 2.3E-104 vscB VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscB) type III secretion system regulatory protein, YscB homolog [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1319 99.841 0.0 vscC VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscC) type III secretion system OM ring protein VscC [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1320 99.307 0.0 vscD VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscD) type III secretion system IM ring protein VscD [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1322 100.0 9.84E-56 vscF VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscF) type III secretion system needle protein VscF [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1323 100.0 2.03E-84 vscG VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscG) Type III secretion system chaperone VscG [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1324 98.558 1.07E-153 vscH VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscH) type III secretion system protein VscH [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1325 100.0 1.97E-80 vscI VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscI) type III secretion system inner rod protein VscI [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1326 99.194 0.0 vscJ VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscJ) type III secretion system IM ring protein VscJ [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1327 99.548 2.7E-165 vscK VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscK) type III secretion system cytoplasmic protein VscK [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1328 100.0 1.3E-156 vscL VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscL) type III secretion system cytoplasmic protein VscL [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1330 99.742 0.0 vopS VF0632 T3SS1 secreted effectors Effector delivery system VFC0086 (vopS) type III secretion system effector VopS, Adenylyltransferase [T3SS1 secreted effectors (VF0632) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio cholerae
CP009982.1_1332 99.692 0.0 vopR VF0632 T3SS1 secreted effectors Effector delivery system VFC0086 (vopR) Type III secretion system effector VopR, phosphoinositide-binding protein [T3SS1 secreted effectors (VF0632) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio cholerae
CP009982.1_1333 100.0 1.42E-111 vecA VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vecA) Type III secretion system chaperone VecA [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1334 99.39 0.0 vopQ VF0632 T3SS1 secreted effectors Effector delivery system VFC0086 (vopQ) type III secretion system effector VopQ [T3SS1 secreted effectors (VF0632) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio cholerae
CP009982.1_1339 99.43 0.0 vscU VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscU) type III secretion system C-ring protein VscU [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1340 99.617 0.0 vscT VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscT) type III secretion system C ring protein VscT [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1341 98.864 7.64E-57 vscS VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscS) type III secretion system C-ring protein VscS [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1342 99.074 4.69E-154 vscR VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscR) type III secretion system C-ring protein VscR [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1343 99.065 0.0 vscQ VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscQ) type III secretion system cytoplasmic protein VscQ [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1344 93.946 0.0 vscP VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscP) type III secretion system needle length control protein VscP [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1345 98.693 1.09E-99 vscO VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscO) type III secretion system protein YscO [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1346 99.091 0.0 vscN VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscN) type III secretion system ATPase VscN [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1347 100.0 0.0 vopN VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vopN) type III secretion system protein VopN [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1348 98.936 1.79E-62 tyeA/vcr1 VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (tyeA/vcr1) type III secretion system regulatory protein [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1349 96.748 6.41E-86 sycN/vcr2 VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (sycN/vcr2) type III secretion system regulatory protein [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1350 100.0 4.84E-91 vscX VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscX) type III secretion system C-ring protein VscX for secretion specificity [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1351 100.0 3.8E-81 vscY VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vscY) type III secretion system C-ring protein VscY for secretion specificity [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1352 100.0 0.0 vcrD VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vcrD) type III secretion system C ring protein VcrD [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1353 97.08 1.65E-99 vcrR VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vcrR) type III secretion system protein VcrR [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1354 100.0 1.08E-64 vcrG VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vcrG) type III secretion system chaperone VcrG [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1355 96.529 0.0 vcrV VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vcrV) type III secretion system needle tip protein VcrV [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1356 100.0 3.04E-121 vcrH VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vcrH) type III secretion system chaperone VcrH [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1357 99.499 0.0 vopB VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vopB) type III secretion system translocator protein VopB [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1358 100.0 0.0 vopD VF0408 T3SS1 Effector delivery system VFC0086 Chromosome I encoded; similar to the Ysc secretion system in Yersinia; T3SS1 genes are positively regulated by VP1699 and negatively regulated by VP1698 (vopD) type III secretion system translocator protein VopD [T3SS1 (VF0408) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1402 99.546 0.0 mam7 VF0512 MAM7 Adherence VFC0001 MAM7 is conserved in many Gram-negative bacteria, contains a transmembrane motif at the N terminus and seven mammalian cell entry (mce) domains that are also found in Mycobacterium spp. and some Gram positive bacteria species (mam7) multivalent adhesion molecule MAM7 [MAM7 (VF0512) - Adherence (VFC0001)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009982.1_1585 69.62 0.0 tssC VF0943 HSI-2 Effector delivery system VFC0086 P. aeruginosa encodes three distinct T6SS loci, H1- to H3-T6SS. While H1-T6SS has only been involved in antibacterial activity so far, H2-T6SS and H3-T6SS can target both bacterial and eukaryotic cells possessing even as said earlier trans-kingdom effectors. (tssC) type VI secretion system contractile sheath large subunit [HSI-2 (VF0943) - Effector delivery system (VFC0086)] [Pseudomonas aeruginosa PAO1] Pseudomonas aeruginosa
CP009982.1_1880 63.922 0.0 acrB VF0568 AcrAB Antimicrobial activity/Competitive advantage VFC0325 (acrB) acriflavine resistance protein B [AcrAB (VF0568) - Antimicrobial activity/Competitive advantage (VFC0325)] [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Klebsiella pneumoniae
CP009982.1_1971 70.751 6.34E-128 nueA VF0473 Polar flagella Motility VFC0204 Types of bacterial movement: swimming, swarming, gliding, twitching and sliding. Only swimming and swarming are correlated with the presence of flagella. Swimming is an individual endeavour, while swarming is the movement of a group of bacteria; constitutively expressed for motility in liquid environments (nueA) NeuA protein [Polar flagella (VF0473) - Motility (VFC0204)] [Aeromonas hydrophila ML09-119] Aeromonas hydrophila
CP009982.1_1974 62.326 0.0 msbA VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (msbA) lipid transporter ATP-binding/permease [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2035 61.78 1.86E-95 clpP VF0074 ClpP Stress survival VFC0282 21.6 kDa protein belongs to a family of proteases highly conserved in prokaryotes and eukaryotes (clpP) ATP-dependent Clp protease proteolytic subunit [ClpP (VF0074) - Stress survival (VFC0282)] [Listeria monocytogenes EGD-e] Listeria monocytogenes
CP009982.1_2115 79.73 2.52E-87 fur VF0113 Fur Regulation VFC0301 (fur) ferric iron uptake transcriptional regulator [Fur (VF0113) - Regulation (VFC0301)] [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] Salmonella enterica (serovar typhimurium)
CP009982.1_2153 84.127 0.0 flaD VF0519 Flagella Motility VFC0204 Single polar flagellum (flaD) flagellin [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2154 76.623 0.0 flaA VF0519 Flagella Motility VFC0204 Single polar flagellum (flaA) flagellin [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2155 69.27 0.0 flgL VF0519 Flagella Motility VFC0204 Single polar flagellum (flgL) flagellar hook-associated protein 3 FlgL [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2156 67.802 0.0 flgK VF0519 Flagella Motility VFC0204 Single polar flagellum (flgK) flagellar hook-associated protein 1 FlgK [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2157 63.175 2.48E-137 flgJ VF0519 Flagella Motility VFC0204 Single polar flagellum (flgJ) peptidoglycan hydrolase [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2158 87.393 0.0 flgI VF0519 Flagella Motility VFC0204 Single polar flagellum (flgI) flagellar P-ring protein precursor FlgI [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2159 74.793 8.89E-133 flgH VF0519 Flagella Motility VFC0204 Single polar flagellum (flgH) flagellar L-ring protein precursor FlgH [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2160 85.878 5.42E-173 flgG VF0519 Flagella Motility VFC0204 Single polar flagellum (flgG) flagellar basal-body rod protein FlgG [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2161 81.526 2.45E-154 flgF VF0519 Flagella Motility VFC0204 Single polar flagellum (flgF) flagellar basal-body rod protein FlgF [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2162 81.693 0.0 flgE VF0519 Flagella Motility VFC0204 Single polar flagellum (flgE) flagellar hook protein FlgE [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2163 85.106 4.78E-147 flgD VF0519 Flagella Motility VFC0204 Single polar flagellum (flgD) flagellar basal-body rod modification protein FlgD [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2164 89.13 1.75E-86 flgC VF0519 Flagella Motility VFC0204 Single polar flagellum (flgC) flagellar basal body rod protein FlgC [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2165 82.443 9.8E-83 flgB VF0519 Flagella Motility VFC0204 Single polar flagellum (flgB) flagellar basal body rod protein FlgB [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2166 93.091 0.0 cheR VF0519 Flagella Motility VFC0204 Single polar flagellum (cheR) chemotaxis protein methyltransferase CheR [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2167 86.688 0.0 cheV VF0519 Flagella Motility VFC0204 Single polar flagellum (cheV) chemotaxis protein CheV [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2169 63.208 2.88E-42 flgM VF0519 Flagella Motility VFC0204 Single polar flagellum (flgM) negative regulator of flagellin synthesis FlgM, putative [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2170 68.794 3.97E-71 flgN VF0519 Flagella Motility VFC0204 Single polar flagellum (flgN) flagellar biosynthesis chaperone FlgN [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2171 83.077 4.91E-75 flgP VF0519 Flagella Motility VFC0204 Single polar flagellum (flgP) Vibrio-specific flagellar H-ring component FlgP [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2172 85.849 2.38E-141 flgO VF0519 Flagella Motility VFC0204 Single polar flagellum (flgO) Vibrio-specific flagellar H-ring component FlgO [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2173 73.867 0.0 flgT VF0519 Flagella Motility VFC0204 Single polar flagellum (flgT) Vibrio-specific flagellar H-ring component FlgT [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2190 80.071 4.89E-174 kdsA VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (kdsA) 2-dehydro-3-deoxyphosphooctonate aldolase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2231 84.758 1.76E-161 IlpA VF0513 IlpA Adherence VFC0001 (IlpA) immunogenic lipoprotein A [IlpA (VF0513) - Adherence (VFC0001)] [Vibrio vulnificus YJ016] Vibrio vulnificus
CP009982.1_2245 82.484 0.0 motB VF0519 Flagella Motility VFC0204 Single polar flagellum (motB) flagellar motor protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2246 90.119 5.17E-158 motA VF0519 Flagella Motility VFC0204 Single polar flagellum (motA) flagellar motor protein [Flagella (VF0519) - Motility (VFC0204)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae
CP009982.1_2361 60.89 0.0 icl VF0253 Isocitrate lyase Others VFC0346 (icl) Isocitrate lyase Icl (isocitrase) (isocitratase) [Isocitrate lyase (VF0253) - Others (VFC0346)] [Mycobacterium tuberculosis H37Rv] Mycobacterium tuberculosis
CP009982.1_2475 74.342 2.1E-173 lpxC VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (lpxC) UDP-3-O-(R-3-hydroxymyristoyl)-N-acetylglucosamine deacetylase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2512 65.021 0.0 rfaE VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (rfaE) ADP-heptose synthase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2661 78.608 0.0 ugd VF0560 Capsule Immune modulation VFC0258 The Klebsiella polysaccharide capsule is produced through a Wzy-dependent process, for which the synthesis and export machinery are encoded in a single 10-30 kb region of the genome known as the K locus.; 78 distinct capsule phenotypes have been recognized by serological typing, but many isolates are serologically non-typable.; capsular serotypes vary substantially in the degree of serum resistance; K1, K2 and K5 are highly serum resistant and are associated with hypervirulent strains that differ from classical K. pneumoniae in that they commonly cause community-acquired disease. (ugd) UDP-glucose 6-dehydrogenase [Capsule (VF0560) - Immune modulation (VFC0258)] [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Klebsiella pneumoniae
CP009982.1_2674 66.667 4.41E-169 siaC/synC VF0079 Capsule Immune modulation VFC0258 The meningococcal capsule-synthesis (cps) gene cluster consists of five regions:; region A harbors the polysaccharide synthesis operon (sia, syn genes); region B contains lip genes responsible for lipid modification; region C harbors ctr genes necessary for polysaccharide transport; region D is involved in lipopolysaccharide synthesis; region D' is a truncated duplication of the region D; region E contains the tex gene homologue; on-off switching of expression via a poly-cytidine tract within siaD (siaC/synC) polysialic acid capsule biosynthesis protein SiaC [Capsule (VF0079) - Immune modulation (VFC0258)] [Neisseria meningitidis MC58] Neisseria meningitidis
CP009982.1_2683 73.482 4.85E-171 rfaD VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (rfaD) ADP-L-glycero-D-mannoheptose-6-epimerase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2698 67.931 6.03E-147 wbtL VF0542 LPS Immune modulation VFC0258 The structure of Francisella spp. lipid A is unique in that it is modified by various carbohydrates that greatly reduce TLR4 activation and allow for immune evasion (wbtL) glucose-1-phosphate thymidylyltransferase [LPS (VF0542) - Immune modulation (VFC0258)] [Francisella tularensis subsp. tularensis SCHU S4] Francisella tularensis
CP009982.1_2699 64.865 7.52E-169 rffG VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (rffG) dTDP-glucose 46-dehydratase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2703 63.095 6.25E-115 lgtF VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (lgtF) beta-1,4-glucosyltransferase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009982.1_2753 66.071 8.67E-157 epsK VF0613 Eps T2SS Effector delivery system VFC0086 (epsK) type II secretion system minor pseudopilin GspK [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009982.1_2754 62.78 3.24E-101 epsJ VF0613 Eps T2SS Effector delivery system VFC0086 (epsJ) type II secretion system minor pseudopilin GspJ [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009982.1_2755 81.25 5.07E-63 epsI VF0613 Eps T2SS Effector delivery system VFC0086 (epsI) type II secretion system minor pseudopilin GspI [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009982.1_2757 90.278 2.03E-95 epsG VF0613 Eps T2SS Effector delivery system VFC0086 (epsG) type II secretion system major pseudopilin GspG [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009982.1_2758 79.259 0.0 epsF VF0613 Eps T2SS Effector delivery system VFC0086 (epsF) type II secretion system inner membrane protein GspF [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009982.1_2759 84.114 0.0 epsE VF0613 Eps T2SS Effector delivery system VFC0086 (epsE) type II secretion system ATPase GspE [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009982.1_2760 82.318 0.0 epsD VF0613 Eps T2SS Effector delivery system VFC0086 (epsD) type II secretion system secretin GspD [Eps T2SS (VF0613) - Effector delivery system (VFC0086)] [Vibrio cholerae O395] Vibrio cholerae
CP009983.1_217 99.76 0.0 tlh VF0610 TLH Exotoxin VFC0235 High-conserved and widely distributed among Vibrio species; a full-protein of 418 amino acids (MW~47.3 kDa), and a post-transductional modification removes the N-terminal signal peptide, leaving a mature protein of 399 amino acids (tlh) thermolabile hemolysin TLH [TLH (VF0610) - Exotoxin (VFC0235)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio parahaemolyticus
CP009983.1_257 69.349 7.48E-131 lfgG VF0474 Lateral flagella Motility VFC0204 (lfgG) lateral flagellar basal-body rod protein LfgG [Lateral flagella (VF0474) - Motility (VFC0204)] [Aeromonas salmonicida subsp. salmonicida A449] Aeromonas salmonicida
CP009983.1_258 60.748 1.2E-88 lfgH VF0474 Lateral flagella Motility VFC0204 (lfgH) lateral flagellar L-ring protein, LfgH [Lateral flagella (VF0474) - Motility (VFC0204)] [Aeromonas salmonicida subsp. salmonicida A449] Aeromonas salmonicida
CP009983.1_275 72.467 0.0 htpB VF0159 Hsp60 Adherence VFC0001 (htpB) Hsp60, 60K heat shock protein HtpB [Hsp60 (VF0159) - Adherence (VFC0001)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Legionella pneumophila
CP009983.1_424 99.195 0.0 VPA0450 VF0632 T3SS1 secreted effectors Effector delivery system VFC0086 (VPA0450) type III secretion system effector [T3SS1 secreted effectors (VF0632) - Effector delivery system (VFC0086)] [Vibrio parahaemolyticus RIMD 2210633] Vibrio cholerae
CP009983.1_425 85.906 7.12E-98 ati1 VF0479 T3SS Effector delivery system VFC0086 Similar to the Yersinia T3SS (ati1) Ati2 chaperone [T3SS (VF0479) - Effector delivery system (VFC0086)] [Aeromonas salmonicida subsp. salmonicida A449] Aeromonas salmonicida
CP009983.1_427 78.933 0.0 katB VF0168 KatAB Stress survival VFC0282 (katB) catalase-peroxidase KatB [KatAB (VF0168) - Stress survival (VFC0282)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Legionella pneumophila
CP009983.1_691 71.946 0.0 VV1_RS15595 VF0612 Flp pili Adherence VFC0001 Flp pili are polymers of the mature Flp pilin protein, and they are assembled and secreted by a complex of proteins encoded by the tad operon. (VV1_RS15595) pilus assembly protein N-terminal domain-containing protein [Flp pili (VF0612) - Adherence (VFC0001)] [Vibrio vulnificus CMCP6] Vibrio vulnificus
CP009983.1_694 86.461 0.0 VV1_RS15610 VF0612 Flp pili Adherence VFC0001 Flp pili are polymers of the mature Flp pilin protein, and they are assembled and secreted by a complex of proteins encoded by the tad operon. (VV1_RS15610) CpaF family protein [Flp pili (VF0612) - Adherence (VFC0001)] [Vibrio vulnificus CMCP6] Vibrio vulnificus
CP009983.1_695 65.246 1.89E-142 VV1_RS15615 VF0612 Flp pili Adherence VFC0001 Flp pili are polymers of the mature Flp pilin protein, and they are assembled and secreted by a complex of proteins encoded by the tad operon. (VV1_RS15615) type II secretion system F family protein [Flp pili (VF0612) - Adherence (VFC0001)] [Vibrio vulnificus CMCP6] Vibrio vulnificus
CP009983.1_733 76.763 0.0 katB VF0168 KatAB Stress survival VFC0282 (katB) catalase-peroxidase KatB [KatAB (VF0168) - Stress survival (VFC0282)] [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Legionella pneumophila
CP009983.1_845 61.538 2.56E-153 galE VF0044 LOS Immune modulation VFC0258 Lic1A (phosphorylcholine (ChoP) kinase) 5'-CAAT-3' within the 5'-end of its coding sequence; lic2A, also referred to as lexA, variation in the number of 5'-CAAT-3' repeats has been shown to correlate directly with phase variation of the Gal-alpha(1-4)beta-Gal LPS structure; But lgtC (glycosyltransferase), another phase-variable gene, ultimately dictates whether this structure is synthesized. lic3A encode a sialyl transferase which directs the substitution of LPS with sialic acid. (galE) UDP-glucose 4-epimerase [LOS (VF0044) - Immune modulation (VFC0258)] [Haemophilus influenzae Rd KW20] Haemophilus influenzae
CP009983.1_1290 74.419 0.0 katA VF0454 KatA Stress survival VFC0282 (katA) catalase [KatA (VF0454) - Stress survival (VFC0282)] [Neisseria meningitidis MC58] Neisseria meningitidis
CP009983.1_1400 60.497 0.0 lfiI VF0474 Lateral flagella Motility VFC0204 (lfiI) lateral flagellar FliI-like assembly ATPase [Lateral flagella (VF0474) - Motility (VFC0204)] [Aeromonas salmonicida subsp. salmonicida A449] Aeromonas salmonicida
CP009983.1_1409 67.826 1.76E-102 fliP VF0474 Lateral flagella Motility VFC0204 (fliP) flagellar biosynthesis protein FliP [Lateral flagella (VF0474) - Motility (VFC0204)] [Aeromonas salmonicida subsp. salmonicida A449] Aeromonas salmonicida
CP009983.1_1410 60.674 4.91E-32 fliQ VF0273 Flagella Motility VFC0204 (fliQ) flagellar biosynthetic protein FliQ [Flagella (VF0273) - Motility (VFC0204)] [Pseudomonas aeruginosa PAO1] Pseudomonas aeruginosa
CP009983.1_1413 62.682 0.0 lfhA VF0474 Lateral flagella Motility VFC0204 (lfhA) lateral flagellar biosynthesis protein [Lateral flagella (VF0474) - Motility (VFC0204)] [Aeromonas salmonicida subsp. salmonicida A449] Aeromonas salmonicida
CP009983.1_1459 69.485 0.0 gbpA VF0619 GbpA Adherence VFC0001 Mucin contains extensively different types of carbohydrates, the residue, N-acetyl-D-glucosamine (GlcNAc), is one of the most abundant sugars in the carbohydrate side chains (gbpA) N-acetylglucosamine-binding protein GbpA [GbpA (VF0619) - Adherence (VFC0001)] [Vibrio cholerae O1 biovar El Tor str. N16961] Vibrio cholerae