Gene "SUMO4"
Found 18 records
Gene information
Gene symbol:
SUMO4
See related:
Ensembl: ENSG00000177688, Gene ID: 387082
Additive variants :
Detected
Genetic interaction partners
No data
Modifier statisitcs
Record:
18 
Disorder:
Vriant:
Reference:
16 
Effect type:
Expressivity(16) ,Pleiotropy(2)  
Modifier effect:
Risk factor(10) ,Altered susceptibility(4) ,Altered immune response(1) ,Altered life span(1) ,Presence of papulopustular lesion(1) ,Vascular involvement(1)  
Details:
  • Variant 1:
    Gene:
    Genomic location:
    dbSNP ID:
    Target disease:
    Behcet's Disease(DOID_13241)
    Effect type:
    Pleiotropy 
    Modifier effect:
    Presence of papulopustular lesion 
    Evidence:
    P=0.006 
    Effect:
    The C438T polymorphism in the SUMO4 gene is associated with significantly increased risk of papulopustular skin lesions in HLA-B51-positive patients.
    Reference:
    Title:
    SUMO4 C438T polymorphism is associated with papulopustular skin lesion in Korean patients with Behçet's disease.
    Species studied:
    Human
    Abstract:
    Small ubiquitin-like modifier 4 (SUMO4) is involved in a range of autoimmune diseases and is known to downregulate the transcription activity of nuclear factor kappa B (NF-κB). Our objective was to investigate the association of a certain polymorphism (C438T) of the SUMO4 gene with Behet's disease (BD) in terms of its incidence and clinical features in Korean patients. We consecutively enrolled 83 patients with BD and 120 healthy controls. Genomic DNA was extracted from whole-blood samples. We identified a single nucleotide change (C438T) in the SUMO4 gene using an amplification refractory mutation system (ARMS) technique. To validate the ARMS technique, we compared its results to the results of direct sequencing in 20 subjects. HLA-B51 status was determined by polymerase chain reaction sequence-specific primers. The presence of papulopustular lesions (P = 0.006) and vascular involvement (P = 0.045) was significantly different between C438T genotypes in HLA-B51-positive patients with BD. There were no differences in allelic or genotypic frequencies of the SUMO4 C438T polymorphism between patients with BD and controls (P = 0.567 and P = 0.818, respectively). The difference in papulopustular skin lesions between CC and CT + TT genotypes in HLA-B51-positive patients with BD was also statistically significant (P = 0.002, OR = 23.40, 95% CI: 2.33-235.54). The C438T polymorphism in the SUMO4 gene is associated with significantly increased risk of papulopustular skin lesions in HLA-B51-positive patients.
  • Variant 2:
    Gene:
    Genomic location:
    dbSNP ID:
    Target disease:
    Behcet's Disease(DOID_13241)
    Effect type:
    Pleiotropy 
    Modifier effect:
    Vascular involvement 
    Evidence:
    P=0.045 
    Effect:
    The C438T polymorphism in the SUMO4 gene is associated with significantly increased risk of papulopustular skin lesions in HLA-B51-positive patients.
    Reference:
    Title:
    SUMO4 C438T polymorphism is associated with papulopustular skin lesion in Korean patients with Behçet's disease.
    Species studied:
    Human
    Abstract:
    Small ubiquitin-like modifier 4 (SUMO4) is involved in a range of autoimmune diseases and is known to downregulate the transcription activity of nuclear factor kappa B (NF-κB). Our objective was to investigate the association of a certain polymorphism (C438T) of the SUMO4 gene with Behet's disease (BD) in terms of its incidence and clinical features in Korean patients. We consecutively enrolled 83 patients with BD and 120 healthy controls. Genomic DNA was extracted from whole-blood samples. We identified a single nucleotide change (C438T) in the SUMO4 gene using an amplification refractory mutation system (ARMS) technique. To validate the ARMS technique, we compared its results to the results of direct sequencing in 20 subjects. HLA-B51 status was determined by polymerase chain reaction sequence-specific primers. The presence of papulopustular lesions (P = 0.006) and vascular involvement (P = 0.045) was significantly different between C438T genotypes in HLA-B51-positive patients with BD. There were no differences in allelic or genotypic frequencies of the SUMO4 C438T polymorphism between patients with BD and controls (P = 0.567 and P = 0.818, respectively). The difference in papulopustular skin lesions between CC and CT + TT genotypes in HLA-B51-positive patients with BD was also statistically significant (P = 0.002, OR = 23.40, 95% CI: 2.33-235.54). The C438T polymorphism in the SUMO4 gene is associated with significantly increased risk of papulopustular skin lesions in HLA-B51-positive patients.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Diabetes Mellitus(DOID_9351)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered life span 
    Evidence:
    P=0.046 
    Effect:
    SUMO4 rs237025 polymorphisms contribute to the development of NODM after LT and NODM is a frequent complication that negatively affects patient survival.
    Reference:
    Title:
    Association of donor and recipient SUMO4 rs237025 genetic variant with new-onset diabetes mellitus after liver transplantation in a Chinese population.
    Species studied:
    Human
    Abstract:
    New-onset diabetes mellitus (NODM) is a common complication after liver transplantation (LT). The small ubiquitin-like modifier 4 (SUMO4) rs237025 polymorphism has been reported to be associated with type 2 diabetes mellitus (T2DM). In this study, we aimed to evaluate the association of donor and recipient SUMO4 rs237025 polymorphisms with NODM and the long-term consequences of NODM after LT.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=0.37, 95% CI: 0.32;0.43; P=0.004 
    Effect:
    The M55V polymorphism in the SUMO4 gene is associated with a reduced risk of diabetic retinopathy in type 1 diabetes.
    Reference:
    Title:
    A M55V polymorphism in the SUMO4 gene is associated with a reduced prevalence of diabetic retinopathy in patients with Type 1 diabetes.
    Species studied:
    Human
    Abstract:
    We studied the association between a functionally relevant M55V polymorphism in the SUMO4 gene with microvascular diabetic complications in patients with type 1 diabetes.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered immune response 
    Evidence:
    A:G = 146:135 versus 136:124; χ2 = 0.007; P=0.935 
    Effect:
    The 163A→G SNP (rs237025; resulting in the amino acid substitution M55V) influences immune responses by modulating NFκB activity.
    Reference:
    Title:
    Assessing the validity of the association between the SUMO4 M55V variant and risk of type 1 diabetes.
    Species studied:
    Human
    Abstract:
    No data
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    A:G = 146:135 versus 136:124; χ2 = 0.007; P=0.935 
    Effect:
    The 163G allele was associated with increased risk for T1D in a collection of European American families.
    Reference:
    Title:
    Assessing the validity of the association between the SUMO4 M55V variant and risk of type 1 diabetes.
    Species studied:
    Human
    Abstract:
    No data
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    Assessment of genotype–phenotype associations 
    Effect:
    SUMO4 M55V is associated with TIDM in association with high-risk HLA-DR3 and DR4, but not by itself.
    Reference:
    Title:
    SUMO4 M55V polymorphism affects susceptibility to type I diabetes in HLA DR3- and DR4-positive Swedish patients.
    Species studied:
    Human
    Abstract:
    SUMO4 M55V, located in IDDM5, has been a focus for debate because of its association to type I diabetes (TIDM) in Asians but not in Caucasians. The current study aims to test the significance of M55V association to TIDM in a large cohort of Swedish Caucasians, and to test whether M55V is associated in those carrying human leukocyte antigen (HLA) class II molecules. A total of 673 TIDM patients and 535 age- and sex-matched healthy controls were included in the study. PCR-RFLP was performed to identify the genotype and allele variations. Our data suggest that SUMO4 M55V is not associated with susceptibility to TIDM by itself. When we stratified our patients and controls based on heterozygosity for HLA-DR3/DR4 and SUMO4 genotypes, we found that presence of SUMO4 GG increased further the relative risk conferred by HLA-DR3/DR4 to TIDM, whereas SUMO4 AA decreased the risk. From the current study, we conclude that SUMO4 M55V is associated with TIDM in association with high-risk HLA-DR3 and DR4, but not by itself.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    In asian population (A versus G: OR=0.79, 95% CI:0.72-0.86, P=0.000) and in caucasian population (A versus G: OR=0.84, 95% CI:0.73-0.97, P=0.007) 
    Effect:
    We detected a significant association of SUMO4 M55V polymorphism with T1DM in Asian population (A versus G: OR=0.79, 95%CI=0.72-0.86, p=0.000) and a significant association of SUMO4 M55V polymorphism with T1DM in Caucasian population (A versus G: OR=0.84, 95%CI=0.73-0.97, p=0.007).
    Reference:
    Title:
    Polymorphism M55V in gene encoding small ubiquitin-like modifier 4 (SUMO4) protein associates with susceptibility to type 1 (and type 2) diabetes.
    Species studied:
    Human
    Abstract:
    The association between small ubiquitin-like modifier 4 (SUMO4) gene polymorphism and type 1 diabetes mellitus (T1DM) or type 2 diabetes mellitus (T2DM) has been investigated in several studies. We conducted a meta-analysis to evaluate the association of SUMO4 gene polymorphism with T1DM and T2DM susceptibility.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered susceptibility 
    Evidence:
    OR=1.236, 95% CI: 1.112-1.373, P=7.9×10(-6) 
    Effect:
    The SUMO4 M55V polymorphism confers susceptibility to T1D in Asians and Europeans.
    Reference:
    Title:
    Association between the SUMO4 M55V (A163G) polymorphism and susceptibility to type 1 diabetes: a meta-analysis.
    Species studied:
    Human
    Abstract:
    The aim of this study was to determine whether the SUMO4 M55V (A163G) polymorphism confers susceptibility to type 1 diabetes (T1D).
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=1.30, 95% CI: (0.54–3.12), P=0.55 
    Effect:
    The M55V polymorphism has been shown to be associated with susceptibility to T1DM in Asians
    Reference:
    Title:
    Association of SUMO4 M55V polymorphism with autoimmune diabetes in Latvian patients.
    Species studied:
    Human
    Abstract:
    Small ubiquitin-related modifier (SUMO4), located in IDDM5, has been identified as a potential susceptibility gene for type 1 diabetes mellitus (T1DM). The novel polymorphism M55V, causing an amino acid change in the evolutionarily conserved met55 residue has been shown to activate the nuclear factor kappaB (NF-kappaB), hence the suspected role of SUMO4 in the pathogenicity of T1DM. The M55V polymorphism has been shown to be associated with susceptibility to T1DM in Asians, but not in Caucasians. Latent autoimmune diabetes in adults (LADA) is a slowly progressive form of T1DM and SUMO4 M55V has not been studied in LADA to date. The current study aims to test whether Latvians are similar to Caucasians in susceptibility to autoimmune diabetes (T1DM and LADA), with respect to SUMO4 M55V. We studied, age- and sex-matched, Latvian T1DM patients (n = 100) and healthy controls (n = 90) and LADA patients (n = 45) and healthy controls (n = 95). SUMO4 M55V polymorphism was analyzed using polymerase chain reaction (PCR)-restriction fragment length polymorphism (RFLP). The allelic frequencies of the A and G alleles were compared with HLA DR3-DR4-positive and HLA DR3-DR4-negative patients to identify any potential relation between HLA DR3-DR4 and SUMO4 M55V. We found no significant association between SUMO4 M55V and T1DM susceptibility in Latvians, the results being in concurrence with the previous studies in Caucasians of British and Canadian origin. Comparison of the A and G alleles with HLA DR3-DR4 did not result in any significant P values. No significant association was found between SUMO4 M55V and LADA. SUMO4 M55V is not associated with susceptibility to T1DM and LADA in Latvians, and Latvians exhibit similarity to other Caucasians with respect to association of SUMO4 M55V with autoimmune diabetes.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered susceptibility 
    Evidence:
    P<0.05, OR=1.51, 95% CI: 1.03-2.13 
    Effect:
    The SUMO4 gene M55V variant is associated with the genetic susceptibility of T1D in Chinese children.
    Reference:
    Title:
    Association of SUMO4 M55V polymorphism with type 1 diabetes in Chinese children.
    Species studied:
    Human
    Abstract:
    A functional polymorphism at codon 55 of the small ubiquitin like modifier 4 (SUMO4) gene (methionine to valine; M55V) was recently found to be associated with type 1 diabetes mellitus mainly in Asian populations (T1D). In the present study, we aimed to investigate whether this locus also contributes to the genetic susceptiblity to type 1 diabetes in Chinese.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=1.9×10(-7) 
    Effect:
    A substitution (M55V) at an evolutionarily conserved residue of the crucial CUE domain of SUMO4 was strongly associated with T1D
    Reference:
    Title:
    A functional variant of SUMO4, a new I kappa B alpha modifier, is associated with type 1 diabetes.
    Species studied:
    Human
    Abstract:
    Previous studies have suggested more than 20 genetic intervals that are associated with susceptibility to type 1 diabetes (T1D), but identification of specific genes has been challenging and largely limited to known candidate genes. Here, we report evidence for an association between T1D and multiple single-nucleotide polymorphisms in 197 kb of genomic DNA in the IDDM5 interval. We cloned a new gene (SUMO4), encoding small ubiquitin-like modifier 4 protein, in the interval. A substitution (M55V) at an evolutionarily conserved residue of the crucial CUE domain of SUMO4 was strongly associated with T1D (P = 1.9 x 10(-7)). SUMO4 conjugates to I kappa B alpha and negatively regulates NF kappa B transcriptional activity. The M55V substitution resulted in 5.5 times greater NF kappa B transcriptional activity and approximately 2 times greater expression of IL12B, an NF kappa B-dependent gene. These findings suggest a new pathway that may be implicated in the pathogenesis of T1D.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=1.42; 95% CI: 1.09-1.84; P=0.0072] 
    Effect:
    The association of SUMO4 M55V variant was stronger in type 1 diabetic patients complicated with AITD
    Reference:
    Title:
    Evidence for the role of small ubiquitin-like modifier 4 as a general autoimmunity locus in the Japanese population.
    Species studied:
    Human
    Abstract:
    Recently, an association of a single nucleotide polymorphism, 163A>G encoding M55V, in the gene SUMO4, which has been shown to be a negative feedback regulator for nuclear factor kappaB, has been reported in type 1 diabetes.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered susceptibility 
    Evidence:
    P=0.018, OR=1.72, 95% CI: 1.1-2.7 
    Effect:
    SUMO4 c.163 G>A polymorphism is associated with the susceptibility to diabetic nephropathy in north Indian subjects with type 2 diabetes.
    Reference:
    Title:
    SUMO4 163 G>A variation is associated with kidney disease in Indian subjects with type 2 diabetes.
    Species studied:
    Human
    Abstract:
    Genetic susceptibility probably plays a role in the development and/or progression of diabetic kidney disease. Small ubiquitin-related modifier 4 (SUMO4) mRNA is expressed in human kidney. Substitution of methionine with valine at codon 55 (M55V) of SUMO4 gene induces higher nuclear factor-kB activity, which is known to mediate the development of kidney disease in individuals with diabetes. We investigated the association between the SUMO4 M55V (rs237025, c.163 G>A) and kidney disease in north Indian subjects with diabetes. A case-control analysis was performed using genomic DNA samples from 216 diabetic patients without nephropathy (DM) and 201 diabetic with nephropathy (DN). The SUMO4 c.163 G>A polymorphism was genotyped using polymerase chain reaction amplification followed by restriction digestion. The duration of diabetes was significantly greater in DN. The genotypic and allelic frequencies were different in DM and DN groups: GG genotype was significantly more frequent in DN as compared to DM (p = 0.018, OR 1.72, 95% CI 1.1-2.7). Similarly the G allele was more frequent in DN compared to DM (p = 0.017, OR 1.4, 95% CI 1.1-1.8). This study suggests that SUMO4 c.163 G>A polymorphism is associated with the susceptibility to diabetic nephropathy in north Indian subjects with type 2 diabetes.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=1.46; 95% CI: 1.08-1.93; P=0.01, chi(2) test 
    Effect:
    These data suggest the contribution of the SUMO4 Met55Val polymorphism to both type 1 and type 2 diabetes susceptibility in the Japanese population.
    Reference:
    Title:
    Association of small ubiquitin-like modifier 4 (SUMO4) variant, located in IDDM5 locus, with type 2 diabetes in the Japanese population.
    Species studied:
    Human
    Abstract:
    Despite distinct differences in the pathogenesis, epidemiological data have indicated familial clustering of type 1 and type 2 diabetes, suggesting a common genetic basis between these two types of diabetes. Few shared susceptibility genes, however, have been reported to date.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    OR=1.18, 95% CI: 1.10-1.28, P=1.63×10(-5) 
    Effect:
    The SUMO4 M55V gene polymorphism (rs237025) may be associated with an increased risk of type 2 diabetes mellitus (T2DM).
    Reference:
    Title:
    Small Ubiquitin-Like Modifier 4 (SUMO4) Gene M55V Polymorphism and Type 2 Diabetes Mellitus: A Meta-analysis Including 6,823 Subjects.
    Species studied:
    Human
    Abstract:
    Many studies suggest that the small ubiquitin-like modifier 4 (SUMO4) M55V gene polymorphism (rs237025) may be associated with an increased risk of type 2 diabetes mellitus (T2DM). However, due to other conflicting results, a clear consensus is lacking in the matter.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    P=0,000, χ2=24,47, OR=0.23, %95 CI: 0,12-0,42 
    Effect:
    The number of SUMO4 M55V MM genotype and M allele carriers was significantly higher in patients compared to the control group
    Reference:
    Title:
    Association of SUMO4 M55V and -94ins/del gene variants with type-2 diabetes.
    Species studied:
    Human
    Abstract:
    There are two different types of diabetes mellitus, type 1 and type 2, with still unclear molecular mechanisms. In the present study, we aimed to investigate the role of small ubiquitin-like modifier 4 (SUMO4) M55V and nuclear factor kappa B1 (NFKB1)-94del/ins in type-2 diabetes mellitus.
  • Gene:
    Genomic location:
    chr6:149721690
    dbSNP ID:
    Alias:
    SUMO4:rs237025, SUMO4:Met55Val, SUMO4:M55V, SUMO4:c.163G>A
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered susceptibility 
    Evidence:
    Assessment of genotype–phenotype associations 
    Effect:
    In Taiwan the SUMO4 Met 55Val polymorphism is associated with susceptibility to T2DM and Type 2 diabetic patients with GG genotype have worse glycemic control.
    Reference:
    Title:
    Small ubiquitin-like modifier-4 Met55Val polymorphism is associated with glycemic control of Type 2 diabetes mellitus in Taiwan.
    Species studied:
    Human
    Abstract:
    The development of Type 2 diabetes mellitus (T2DM) has been recognized to be associated with a combination of pancreatic beta-cell dysfunction and insulin resistance. Nuclear factor-kappaB (NF-kappaB) has been recognized as one central mediator in the reaction of inflammation and proapoptotic event in beta-cells. A functional polymorphism at the codon 55 (methionine to valine; A163G) of the small ubiquitin- like modifier-4 (SUMO4) gene may result in higher NF-kappaB activity. This study investigates whether this SUMO4 Met55Val polymorphism also contributes to the development of T2DM.