The SRAS-CoV-2 genome sequences and metadata used in this service are publicly available from GISAID (http://gisaid.org) and Genbank (https://www.ncbi.nlm.nih.gov/genbank). NC_045512.2 (SARS-CoV-2) was used as the reference sequence, and data were analyzed from 1,155,016 SARS-Cov-2 sequences after quality control as of Aug 06th. The variant annotation method was Annovar (version number: 2019Oct24).
变异 |
物种编号 |
染色体 |
位置 |
ref |
alt |
类型 |
区域 |
基因 |
氨基酸变化 |
氨基酸变化位置 |
同义/非同义 |
宿主 |
国家 |
突变频率 |
变异毒株 |
NC_045512.2:29804:T->A |
2697049 |
NC_045512.2 |
29804 |
T |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0006‰ |
14
|
NC_045512.2:29804:T->TA |
2697049 |
NC_045512.2 |
29804 |
T |
TA |
indel |
downstream |
|
|
|
|
Homo sapiens |
China |
0‰ |
2
|
NC_045512.2:29803:C->T |
2697049 |
NC_045512.2 |
29803 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0124‰ |
286
|
NC_045512.2:29803:C->G |
2697049 |
NC_045512.2 |
29803 |
C |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
India |
0‰ |
2
|
NC_045512.2:29803:C->A |
2697049 |
NC_045512.2 |
29803 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.0097‰ |
225
|
NC_045512.2:29802:C->A |
2697049 |
NC_045512.2 |
29802 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.0001‰ |
4
|
NC_045512.2:29802:C->T |
2697049 |
NC_045512.2 |
29802 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
Spain |
0.006‰ |
140
|
NC_045512.2:29801:CCCTAATGT->C |
2697049 |
NC_045512.2 |
29801 |
CCCTAATGT |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
Iraq |
0‰ |
1
|
NC_045512.2:29801:C->A |
2697049 |
NC_045512.2 |
29801 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
Spain |
0.0004‰ |
10
|
NC_045512.2:29801:C->G |
2697049 |
NC_045512.2 |
29801 |
C |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
India |
0.0002‰ |
5
|
NC_045512.2:29801:C->T |
2697049 |
NC_045512.2 |
29801 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
Canada |
0.0029‰ |
68
|
NC_045512.2:29800:GCCC->G |
2697049 |
NC_045512.2 |
29800 |
GCCC |
G |
indel |
downstream |
|
|
|
|
Homo sapiens |
Indonesia |
0‰ |
1
|
NC_045512.2:29800:G->GC |
2697049 |
NC_045512.2 |
29800 |
G |
GC |
indel |
downstream |
|
|
|
|
Homo sapiens |
Uganda |
0‰ |
1
|
NC_045512.2:29800:G->A |
2697049 |
NC_045512.2 |
29800 |
G |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
South Africa |
0.0055‰ |
127
|
NC_045512.2:29800:GC->G |
2697049 |
NC_045512.2 |
29800 |
GC |
G |
indel |
downstream |
|
|
|
|
Homo sapiens |
Netherlands |
0.0004‰ |
10
|
NC_045512.2:29800:G->C |
2697049 |
NC_045512.2 |
29800 |
G |
C |
snv |
downstream |
|
|
|
|
Homo sapiens |
Australia |
0.0003‰ |
8
|
NC_045512.2:29800:G->T |
2697049 |
NC_045512.2 |
29800 |
G |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.001‰ |
24
|
NC_045512.2:29799:A->C |
2697049 |
NC_045512.2 |
29799 |
A |
C |
snv |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.0006‰ |
15
|
NC_045512.2:29799:A->G |
2697049 |
NC_045512.2 |
29799 |
A |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
Singapore |
0.002‰ |
47
|
NC_045512.2:29798:G->T |
2697049 |
NC_045512.2 |
29798 |
G |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.0013‰ |
30
|