The SRAS-CoV-2 genome sequences and metadata used in this service are publicly available from GISAID (http://gisaid.org) and Genbank (https://www.ncbi.nlm.nih.gov/genbank). NC_045512.2 (SARS-CoV-2) was used as the reference sequence, and data were analyzed from 1,155,016 SARS-Cov-2 sequences after quality control as of Aug 06th. The variant annotation method was Annovar (version number: 2019Oct24).
| 变异 |
物种编号 |
染色体 |
位置 |
ref |
alt |
类型 |
区域 |
基因 |
氨基酸变化 |
氨基酸变化位置 |
同义/非同义 |
宿主 |
国家 |
突变频率 |
变异毒株 |
| NC_045512.2:29750:CGATCGAGT->C |
2697049 |
NC_045512.2 |
29750 |
CGATCGAGT |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
Canada |
0.0008‰ |
20
|
| NC_045512.2:29750:CGATCGAGTGTACA->C |
2697049 |
NC_045512.2 |
29750 |
CGATCGAGTGTACA |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.0003‰ |
7
|
| NC_045512.2:29750:C->A |
2697049 |
NC_045512.2 |
29750 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
India |
0.0004‰ |
11
|
| NC_045512.2:29750:C->T |
2697049 |
NC_045512.2 |
29750 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
Netherlands,
United Kingdom,
Italy,
Germany,
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|
0.0905‰ |
2084
|
| NC_045512.2:29750:C->G |
2697049 |
NC_045512.2 |
29750 |
C |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
Italy |
0.0007‰ |
17
|
| NC_045512.2:29749:ACGATCGAGTGT->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCGAGTGT |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
Switzerland |
0‰ |
1
|
| NC_045512.2:29749:ACGATCGAGTGTACAGTGAACAATG->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCGAGTGTACAGTGAACAATG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
Italy |
0‰ |
1
|
| NC_045512.2:29749:ACGATCGAGTGTACAGTGAACAATGC->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCGAGTGTACAGTGAACAATGC |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0‰ |
1
|
| NC_045512.2:29749:A->C |
2697049 |
NC_045512.2 |
29749 |
A |
C |
snv |
downstream |
|
|
|
|
Homo sapiens |
Italy |
0.0001‰ |
3
|
| NC_045512.2:29749:ACGATCGAGT->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCGAGT |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0‰ |
1
|
| NC_045512.2:29749:A->AATAACACTT |
2697049 |
NC_045512.2 |
29749 |
A |
AATAACACTT |
indel |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0‰ |
1
|
| NC_045512.2:29749:ACGATCGAGTGTACAGTG->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCGAGTGTACAGTG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0004‰ |
10
|
| NC_045512.2:29749:ACGATCG->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0003‰ |
9
|
| NC_045512.2:29749:A->AG |
2697049 |
NC_045512.2 |
29749 |
A |
AG |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0‰ |
2
|
| NC_045512.2:29749:ACGAT->A |
2697049 |
NC_045512.2 |
29749 |
ACGAT |
A |
indel |
downstream |
|
|
|
|
environmental samples |
China |
0‰ |
2
|
| NC_045512.2:29749:A->T |
2697049 |
NC_045512.2 |
29749 |
A |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0006‰ |
16
|
| NC_045512.2:29749:ACG->A |
2697049 |
NC_045512.2 |
29749 |
ACG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0008‰ |
20
|
| NC_045512.2:29749:A->G |
2697049 |
NC_045512.2 |
29749 |
A |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
India |
0.0011‰ |
27
|
| NC_045512.2:29749:ACGATC->A |
2697049 |
NC_045512.2 |
29749 |
ACGATC |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United Kingdom |
0.0043‰ |
101
|
| NC_045512.2:29749:ACGATCGAGTG->A |
2697049 |
NC_045512.2 |
29749 |
ACGATCGAGTG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States,Australia |
0.0066‰ |
154
|