| Pathogen name | Scientific name | Rank | Genomes | Strain | Safety Level | Isolate type | |
|---|---|---|---|---|---|---|---|
| Alphainfluenzavirus Influenzae H3Nx | H3N2 subtype | serotype | 13,503 | 0 | Class II / High | ||
| Coronavirus (low pathogenicity to human) | Betacoronavirus | genus | 12,757 | 0 | Class III | ||
| Sarbecovirus | Sarbecovirus | subgenus | 12,647 | 0 | Class II / High | ||
| Severe acute respiratory syndrome coronavirus 2, (SARS-CoV-2) | Severe acute respiratory syndrome coronavirus 2 | no rank | 12,448 | 0 | Class II | ||
| Alphainfluenzavirus Influenzae H1Nx | H1N1 subtype | serotype | 11,378 | 120 | Class II / High | ||
| Mpox virus | Monkeypox virus | no rank | 6,960 | 14 | Class I / High | ||
| Rotavirus | Rotavirus | genus | 2,573 | 0 | Class III | ||
| Alphainfluenzavirus Influenzae H5Nx | H5N1 subtype | serotype | 1,871 | 20 | Class II / High | ||
| Alphainfluenzavirus Influenzae H3Nx | H3N8 subtype | serotype | 1,296 | 0 | Class II / High | ||
| Alphainfluenzavirus Influenzae H1Nx | H1N2 subtype | serotype | 1,138 | 0 | Class II / High | ||
| Norovirus | Norovirus | genus | 918 | 1 | Class III | ||
| Alphainfluenzavirus Influenzae H7Nx | H7N9 subtype | serotype | 745 | 0 | Class II / High | ||
| Lentivirus (Non highly pathogenic) | Lentivirus | genus | 667 | 0 | Class III | ||
| West Nile virus | West Nile virus | no rank | 635 | 0 | Class II | ||
| Alphainfluenzavirus Influenzae H5Nx | H5N2 subtype | serotype | 624 | 0 | Class II / High | ||
| Epstein-Barr virus | Human gammaherpesvirus 4 | no rank | 586 | 76 | Class III | ||
| Alphainfluenzavirus Influenzae H6Nx | H6N2 subtype | serotype | 549 | 0 | Class II / High | ||
| Enterovirus | Enterovirus | genus | 529 | 18 | Class III | ||
| Human immunodeficiency virus (HIV) (Type 1 and 2 virus) | Human immunodeficiency virus 1 | no rank | 499 | 0 | Class II | ||
| Alphainfluenzavirus Influenzae H7Nx | H7N3 subtype | serotype | 462 | 0 | Class II / High |