2. PATHOGENS
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Pathogen name Scientific name Rank Genomes Strain Safety Level Isolate type
Salmonella enterica non typhoidal serovars Salmonella enterica non typhoidal serovars serogroup 604,130 549,461 Class III / High
Salmonella enterica Salmonella enterica species 604,130 549,461 Class III
Pathogenic Escherichia coli Escherichia coli species 372,348 266,361 Class III
Streptococcus spp. Streptococcus genus 171,735 60,688 Class III
Staphylococcus aureus Staphylococcus aureus species 119,333 64,306 Class III
Klebsiella pnenmoniae Klebsiella pneumoniae species 104,388 62,119 Class III / High
Campylobacter jejuni Campylobacter jejuni species 104,315 86,391 Class III
Streptococcus pneumoniae Streptococcus pneumoniae species 80,043 27,182 Class III
Listeria monocytogenes Listeria monocytogenes species 71,099 52,281 Class III
Streptococcus pyogenes Streptococcus pyogenes species 48,837 17,801 Class III
Neisseria gonorrhoeae Neisseria gonorrhoeae species 48,562 39,469 Class III
Pseudomonas aeruginosa Pseudomonas aeruginosa species 47,530 29,531 Class III
Acinetobacter baumannii Acinetobacter baumannii species 46,354 27,403 Class III
Campylobacter coli Campylobacter coli species 39,971 34,664 Class III
Shigella sonnei Shigella sonnei species 25,375 21,883 Class III
Shigella flexneri Shigella flexneri species 23,352 19,903 Class III
Clostridioides difficile Clostridioides difficile species 23,165 13,118 Class III
Vibrio parahaemolyticus Vibrio parahaemolyticus species 14,527 12,080 Class III
Neisseria meningitidis Neisseria meningitidis species 13,762 5,952 Class III
Alphainfluenzavirus Influenzae H3Nx H3N2 subtype serotype 13,521 0 Class II / High
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