The SRAS-CoV-2 genome sequences and metadata used in this service are publicly available from GISAID (http://gisaid.org) and Genbank (https://www.ncbi.nlm.nih.gov/genbank). NC_045512.2 (SARS-CoV-2) was used as the reference sequence, and data were analyzed from 1,155,016 SARS-Cov-2 sequences after quality control as of Aug 06th. The variant annotation method was Annovar (version number: 2019Oct24).
变异 |
物种编号 |
染色体 |
位置 |
ref |
alt |
类型 |
区域 |
基因 |
氨基酸变化 |
氨基酸变化位置 |
同义/非同义 |
宿主 |
国家 |
突变频率 |
变异毒株 |
NC_045512.2:29852:AGCTTCTTAGGAGAATGAC->A |
2697049 |
NC_045512.2 |
29852 |
AGCTTCTTAGGAGAATGAC |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
Belgium |
0‰ |
1
|
NC_045512.2:29852:AG->A |
2697049 |
NC_045512.2 |
29852 |
AG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
Germany |
0‰ |
1
|
NC_045512.2:29852:A->GCACT |
2697049 |
NC_045512.2 |
29852 |
A |
GCACT |
indel |
downstream |
|
|
|
|
Homo sapiens |
India |
0‰ |
1
|
NC_045512.2:29852:A->C |
2697049 |
NC_045512.2 |
29852 |
A |
C |
snv |
downstream |
|
|
|
|
Homo sapiens |
India |
0.0006‰ |
14
|
NC_045512.2:29852:A->T |
2697049 |
NC_045512.2 |
29852 |
A |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
Bangladesh,
China,
Peru,
Spain,
查看全部
|
0.0031‰ |
73
|
NC_045512.2:29852:A->G |
2697049 |
NC_045512.2 |
29852 |
A |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
Saudi Arabia |
0.0039‰ |
91
|
NC_045512.2:29851:TAGCTTCTTAGGAGAATG->C |
2697049 |
NC_045512.2 |
29851 |
TAGCTTCTTAGGAGAATG |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
Malaysia |
0‰ |
1
|
NC_045512.2:29851:TA->T |
2697049 |
NC_045512.2 |
29851 |
TA |
T |
indel |
downstream |
|
|
|
|
Homo sapiens |
Slovenia |
0‰ |
1
|
NC_045512.2:29851:T->TC |
2697049 |
NC_045512.2 |
29851 |
T |
TC |
indel |
downstream |
|
|
|
|
Homo sapiens |
India |
0.0001‰ |
4
|
NC_045512.2:29851:T->G |
2697049 |
NC_045512.2 |
29851 |
T |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
Spain |
0.0002‰ |
5
|
NC_045512.2:29851:T->C |
2697049 |
NC_045512.2 |
29851 |
T |
C |
snv |
downstream |
|
|
|
|
Homo sapiens |
China,
Chile,
Peru,
Russia,
查看全部
|
0.0008‰ |
20
|
NC_045512.2:29851:T->A |
2697049 |
NC_045512.2 |
29851 |
T |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
Saudi Arabia |
0.0011‰ |
27
|
NC_045512.2:29851:T->TTA |
2697049 |
NC_045512.2 |
29851 |
T |
TTA |
indel |
downstream |
|
|
|
|
Homo sapiens |
Bangladesh |
0‰ |
2
|
NC_045512.2:29851:T->TA |
2697049 |
NC_045512.2 |
29851 |
T |
TA |
indel |
downstream |
|
|
|
|
Homo sapiens |
China |
0.0001‰ |
3
|
NC_045512.2:29850:AT->A |
2697049 |
NC_045512.2 |
29850 |
AT |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
Belgium |
0.0001‰ |
4
|
NC_045512.2:29850:ATAG->A |
2697049 |
NC_045512.2 |
29850 |
ATAG |
A |
indel |
downstream |
|
|
|
|
Homo sapiens |
North Macedonia |
0‰ |
1
|
NC_045512.2:29850:A->GTGCACTTTTT |
2697049 |
NC_045512.2 |
29850 |
A |
GTGCACTTTTT |
indel |
downstream |
|
|
|
|
Homo sapiens |
India |
0‰ |
1
|
NC_045512.2:29850:A->AT |
2697049 |
NC_045512.2 |
29850 |
A |
AT |
indel |
downstream |
|
|
|
|
Homo sapiens |
China |
0.0001‰ |
4
|
NC_045512.2:29850:A->T |
2697049 |
NC_045512.2 |
29850 |
A |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
Bangladesh,
Belgium,
Chile,
Spain,
查看全部
|
0.0047‰ |
109
|
NC_045512.2:29850:A->C |
2697049 |
NC_045512.2 |
29850 |
A |
C |
snv |
downstream |
|
|
|
|
Homo sapiens |
Bangladesh,China |
0.0041‰ |
95
|