OEAV1130658
SARS-CoV-2/environment/BRA/FPOLIS-sewage-02/2020 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene
MT925974
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2020-02-20
wastewater metagenome
277
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
277
100.00
OEAV1130659
SARS-CoV-2/environment/BRA/FPOLIS-sewage-02/2020 surface glycoprotein (S) gene
MT925978
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2020-02-20
wastewater metagenome
107
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
107
100.00
OEAV1130660
SARS-CoV-2/environment/BRA/FPOLIS-sewage-03/2020 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene
MT925975
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2020-03-04
wastewater metagenome
277
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
277
100.00
OEAV1130661
SARS-CoV-2/environment/BRA/FPOLIS-sewage-03/2020 surface glycoprotein (S) gene
MT925979
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2020-03-04
wastewater metagenome
107
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
107
100.00
OEAV1130662
SARS-CoV-2/environment/BRA/FPOLIS-sewage-11/2019 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene
MT925972
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2019-11-27
wastewater metagenome
277
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
277
100.00
OEAV1130663
SARS-CoV-2/environment/BRA/FPOLIS-sewage-11/2019 surface glycoprotein (S) gene
MT925976
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2019-11-27
wastewater metagenome
107
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
107
100.00
OEAV1130664
SARS-CoV-2/environment/BRA/FPOLIS-sewage-12/2019 ORF1ab polyprotein, RNA-dependent RNA polymerase region, (ORF1ab) gene
MT925973
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2019-12-11
wastewater metagenome
277
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
277
100.00
OEAV1130665
SARS-CoV-2/environment/BRA/FPOLIS-sewage-12/2019 surface glycoprotein (S) gene
MT925977
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Brazil
2019-12-11
wastewater metagenome
107
2021-03-29
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Fongaro,G., Stoco,P.H., Sobral,D., Grisard,E.C., Magri,M.E., Rogovski,P., Schorner,M., Barazzetti,F., Christoff,A.C., de Oliveira,L.F., Bazzo,M.L., Wagner,G., Hernandez,M. and Rodriguez-Lazaro,D.
Microbiology, Imunology and Parasitology Departament, Federal University of Santa Catarina
107
100.00
OEAV251431
SARS-CoV-2/environment/ITA/3230/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843229
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2020-02-25
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV251434
SARS-CoV-2/environment/ITA/3241/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843232
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2020-02-23
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV251435
SARS-CoV-2/environment/ITA/3243/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843233
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2020-02-28
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV251436
SARS-CoV-2/environment/ITA/3289/2019 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843234
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2019-12-18
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV251438
SARS-CoV-2/environment/ITA/3335/2019 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843236
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2019-12-18
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV251439
SARS-CoV-2/environment/ITA/3337/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843237
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2020-01-14
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV251440
SARS-CoV-2/environment/ITA/3347/2020 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
MT843238
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Italy
2020-02-25
wastewater metagenome
287
2020-08-28
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
La Rosa,G., Mancini,P., Bonanno Ferraro,G., Veneri,C., Iaconelli,M., Bonadonna,L., Lucentini,L. and Suffredini,E.
Food Safety
287
100.00
OEAV3786807
SARS-CoV-2/Wastewater/HRV/PV53-PV55-PV57-PV64/2021 ORF1ab polyprotein, 3'-to-5' exonuclease region, (ORF1ab) gene
OK085824
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Croatia
2021-01-02
wastewater metagenome
330
2021-09-10
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Brnic,D., Lojkic,I. and Jemersic,L.
Veterinary Public Health, Croatian Veterinary Institute
330
100.00
OEAV591818
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Sewage/USA/UF-39/2021
MW605100
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2021-01-12
wastewater metagenome
29884
2021-02-16
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Rainey,A., Bisesi,S.E., Loeb,J.C., Maurelli,A.T., Sabo-Attwood,T., Lednicky,J.A. and Bisesi,J.H.
Environmental and Global Health, University of Florida
29884
100.00
OEAV591819
Severe acute respiratory syndrome coronavirus 2 isolate SARS-CoV-2/Sewage/USA/UF-40/2020
MW605103
RNA viruses
Severe acute respiratory syndrome coronavirus 2
United States
2020-08-12
wastewater metagenome
29895
2021-02-16
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Rainey,A., Bisesi,S.E., Loeb,J.C., Maurelli,A.T., Sabo-Attwood,T., Lednicky,J.A. and Bisesi,J.H.
Environmental and Global Health, University of Florida
29895
100.00
OEAV859403
SARS-CoV-2/Environment/NPL/GW14/2020 ORF1ab polyprotein (ORF1ab) gene, partial cds; ORF1a polyprotein (ORF1ab) gene, complete cds; surface glycoprotein (S) gene, partial cds; ORF3a protein (ORF3a) gene, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; ORF6 protein (ORF6) gene, complete cds; and ORF7a protein (ORF7a), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes
MW739929
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Nepal
2020-11-11
wastewater metagenome
29302
2021-03-14
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Napit,R., Manandhar,P. and Karmacharya,D.
One Health Research Division, Center for Molecular Dynamics Nepal, Thapathali-11, Kathmandu, Bagmati 44600
17315
59.09
OEAV859404
SARS-CoV-2/Environment/NPL/GW15/2020 ORF1ab polyprotein (ORF1ab), ORF1a polyprotein (ORF1ab), and surface glycoprotein (S) genes, partial cds; ORF3a protein (ORF3a) gene, complete cds; envelope protein (E) and membrane glycoprotein (M) genes, partial cds; ORF6 protein (ORF6) gene, complete cds; and ORF7a protein (ORF7a), ORF8 protein (ORF8), and nucleocapsid phosphoprotein (N) genes
MW739930
RNA viruses
Severe acute respiratory syndrome coronavirus 2
Nepal
2020-12-01
wastewater metagenome
29014
2021-03-14
2697049
Severe acute respiratory syndrome-related coronavirus
Betacoronavirus
Coronaviridae
NCBI Virus/Genbank
Napit,R., Manandhar,P. and Karmacharya,D.
One Health Research Division, Center for Molecular Dynamics Nepal, Thapathali-11, Kathmandu, Bagmati 44600
20375
70.22