| VENAS |
Viral Genome Evolutionary Analysis System |
https://github.com/qianjiaqiang/VENAS/ |
Sci Bull (Beijing), 2022 |
10.1016/j.scib.2022.01.001 |
| iMAAPs |
iMAAPs is a powerful tool to estimate multiple-wave population admixed time |
https://www.picb.ac.cn/PGG/resource.php |
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| LandSCENT |
Landscape Single Cell Entropy, a R-package for the analysis of single-cell RNA-Seq data |
https://github.com/ChenWeiyan/LandSCENT/ |
Communications Biology, 2019 |
10.1038/s42003-019-0554-8 |
| ChAMP |
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC |
https://bioconductor.org/packages/release/bioc/html/ChAMP.html |
Bioinformatics, 2017 |
10.1093/bioinformatics/btx513 |
| AdmixInfer |
Infer population histories under the three typical models |
https://www.picb.ac.cn/PGG/resource_file/PGG_Web_Soft/AdmixInfer.tar.gz |
Scientific Reports, 2016 |
10.1038/srep20048 |
| WinXPCNVer |
WinXPCNVer is tool package for calculating the Vst values between two populations probe by probe in a sliding window, which could be used to detect highly differentiated variants between populations. |
https://www.picb.ac.cn/PGG/resource.php |
Am J Hum Genet, 2015 |
10.1016/j.ajhg.2015.05.005 |
| BMIQ |
A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. |
https://www.picb.ac.cn/compsysg/Software/BMIQ/BMIQ_1.4.R |
Bioinformatics, 2013 |
10.1093/bioinformatics/bts680 |
| DART |
Denoising Algorithm based on Relevance network Topology |
http://www.bioconductor.org/packages/release/bioc/html/DART.html |
BMC Bioinformatics, 2011 |
10.1186/1471-2105-12-403 |
| ISVA |
Independent Surrogate Variable Analysis, an algorithm for feature selection in the presence of potential confounding factors. |
https://cran.r-project.org/web/packages/isva/index.html |
Bioinformatics, 2011 |
10.1093/bioinformatics/btr171 |
| PEAS V1.0 |
PEAS V1.0: a package for elementary analysis of SNP data |
https://www.picb.ac.cn/PGG/resource_file/PGG_Web_Soft/PEAS.zip |
Mol Ecol Resour, 2010 |
10.1111/j.1755-0998.2010.02862.x |
