Download-Only
| Author | Name | Description | Release & Version | Access | Publication /Citation |
|---|---|---|---|---|---|
| VENAS
|
a Viral genome Evolution Network Analysis System | 2022, V1.0 | https://github.com/qianjiaqiang/VENAS | ||
| iMAAPs | iMAAPs is a powerful tool to estimate multiple-wave population admixed time | 2021, V1.0 | https://www.picb.ac.cn/PGG/resource.php | ||
| LandSCENT | Landscape Single Cell Entropy, a R-package for the analysis of single-cell RNA-Seq data. | 2019, V1.0 | https://github.com/ChenWeiyan/LandSCENT | ||
| AdmixInfer | Infer population histories under the three typical models | 2016, V1.0 | https://www.picb.ac.cn/PGG/resource_file/PGG_Web_Soft/AdmixInfer.tar.gz | ||
| WinXPCNVer | WinXPCNVer is tool package for calculating the Vst values between two populations probe by probe in a sliding window, which could be used to detect highly differentiated variants between populations. | 2015, V1.0 | https://www.picb.ac.cn/PGG/resource.php | ||
| BMIQ | A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data. | 2013, V1.0 | https://www.picb.ac.cn/compsysg/Software/BMIQ/BMIQ_1.4.R | ||
| ISVA | Independent Surrogate Variable Analysis, an algorithm for feature selection in the presence of potential confounding factors. | 2011, v1.0 | https://cran.r-project.org/web/packages/isva/index.html |
PMID: 21471010
DOI: 10.1093/bioinformatics/btr171
|
|
| PEAS V1.0 | PEAS V1.0: a package for elementary analysis of SNP data | 2010, V1.0 | https://www.picb.ac.cn/PGG/resource_file/PGG_Web_Soft/PEAS.zip | ||
| ChAMP | The package includes quality control metrics, a selection of normalization methods and novel methods to identify differentially methylated regions and to highlight copy number alterations. | N/A | https://bioconductor.org/packages/release/bioc/html/ChAMP.html | ||
| DART | An algorithm designed to evaluate the consistency of prior information molecular signatures in independent molecular data. If consistent, a pruning network strategy is then used to infer the activation status of the molecular signature in individual samples. | N/A | http://www.bioconductor.org/packages/release/bioc/html/DART.html | ||
| SC | SC (Spatial Coalescent simulator) is a computer simulation tool for modeling spatial coalescent with recombination process. | N/A | https://www.picb.ac.cn/PGG/resource.php |