| Pathogen name | Scientific name | Rank | Genomes | Strain | Safety Level | Isolate type | |
|---|---|---|---|---|---|---|---|
| Fusarium oxysporum complex | Fusarium oxysporum | species | 774 | 690 | Class III | Environment | |
| Candida auris | [Candida] auris | species | 500 | 391 | Class III | Human | |
| Aspergillus fumigatus complex | Aspergillus fumigatus | species | 357 | 350 | Class III | Environment | |
| Beauveria spp. | Beauveria | genus | 351 | 349 | Class III | Environment | |
| Colletotrichum spp. | Colletotrichum | genus | 327 | 279 | Class III | ||
| Aspergillus flavus complex | Aspergillus flavus | species | 306 | 295 | Class III | Environment | |
| Ulocladium spp. | Alternaria | genus | 222 | 200 | Class III | ||
| Rhodotorula spp. | Rhodotorula | genus | 205 | 189 | Class III | Environment | |
| Aureobasidium spp. | Aureobasidium | genus | 183 | 165 | Class III | Environment | |
| Cryptococcus neoformans complex | Cryptococcus neoformans | species | 179 | 156 | Class III | ||
| Ogataea spp. | Ogataea | genus | 150 | 95 | Class III | Environment | |
| Aspergillus flavus complex | Aspergillus oryzae | species | 124 | 121 | Environment | ||
| Candida albicans | Candida albicans | species | 122 | 104 | Class III | ||
| Clavispora spp. | Clavispora | genus | 103 | 99 | Class III | ||
| Fusarium solani complex | Fusarium solani species complex | species group | 101 | 92 | Class III | Environment | |
| Alternaria alternata | Alternaria alternata | species | 98 | 90 | Class III | ||
| Candida glabrata complex | Nakaseomyces glabratus | species | 79 | 65 | Class III | Environment | |
| Hortaea werneckii | Hortaea werneckii | species | 72 | 69 | Class III | Environment | |
| Diaporthe spp. | Diaporthe | genus | 66 | 56 | Class III | Food | |
| Candida parapsilosis complex | Candida parapsilosis | species | 60 | 50 | Class III | Environment |