| Pathogen name | Scientific name | Rank | Genomes | Strain | Safety Level | Isolate type | |
|---|---|---|---|---|---|---|---|
| Fusarium oxysporum complex | Fusarium oxysporum | species | 802 | 691 | Class III | ||
| Candida auris | [Candida] auris | species | 654 | 396 | Class III | ||
| Beauveria spp. | Beauveria | genus | 375 | 373 | Class III | ||
| Aspergillus fumigatus complex | Aspergillus fumigatus | species | 360 | 351 | Class III | ||
| Colletotrichum spp. | Colletotrichum | genus | 329 | 279 | Class III | ||
| Aspergillus flavus complex | Aspergillus flavus | species | 319 | 295 | Class III | ||
| Ulocladium spp. | Alternaria | genus | 259 | 200 | Class III | ||
| Rhodotorula spp. | Rhodotorula | genus | 217 | 191 | Class III | ||
| Cryptococcus neoformans complex | Cryptococcus neoformans | species | 193 | 157 | Class III | ||
| Aureobasidium spp. | Aureobasidium | genus | 189 | 170 | Class III | ||
| Ogataea spp. | Ogataea | genus | 150 | 95 | Class III | ||
| Alternaria alternata | Alternaria alternata | species | 133 | 90 | Class III | ||
| Candida albicans | Candida albicans | species | 132 | 104 | Class III | ||
| Aspergillus flavus complex | Aspergillus oryzae | species | 125 | 121 | |||
| Fusarium solani complex | Fusarium solani species complex | species group | 104 | 94 | Class III | ||
| Clavispora spp. | Clavispora | genus | 103 | 99 | Class III | ||
| Candida glabrata complex | Nakaseomyces glabratus | species | 87 | 68 | Class III | ||
| Hortaea werneckii | Hortaea werneckii | species | 75 | 69 | Class III | ||
| Diaporthe spp. | Diaporthe | genus | 68 | 57 | Class III | ||
| Candida parapsilosis complex | Candida parapsilosis | species | 65 | 51 | Class III |