Gene "UCP3"
Found 13 records
Gene information
Gene symbol:
UCP3
See related:
Ensembl: ENSG00000175564, Gene ID: 7352
Additive variants :
Detected
Genetic interaction partners
Confidence      Stringent (ε>0.16 or ε<-0.12)      Intermediate (-0.16≤ε≤-0.08 or 0.08≤ε≤0.16)      Lenient (|ε|<0.08)
Positive interactions
  • XPA 
  • TSSK3 
  • PRDX1 
  • PUM3 
  • COX10 
  • ERCC4 
  • MSH4 
  • SLC20A1 
  • TPT1 
  • SLC25A17 
  • ABHD2 
  • LIPT1 
  • PC 
  • ELOF1 
  • RABL2B 
  • WDR59 
  • PSMD4 
  • DLAT 
  • ALG6 
  • PLAA 
  • HDAC7 
  • IDH3A 
  • H2AFX 
  • UBE3C 
  • PPP6R3 
  • RPUSD1 
  • AP2M1 
  • RPS6 
  • GABARAP 
  • TGIF2 
  • ZDHHC6 
  • ME1 
  • OVCA2 
  • PPP6R3 
  • SUCO 
  • ERN1 
  • TRAPPC6A 
  • FH 
  • ISYNA1 
  • PIAS1 
  • PSPH 
  • XPOT 
  • RHEB 
  • SDHAF2 
  • ABCG2 
  • SLC25A28 
  • RPS6KA1 
  • TOP1 
  • RPL15 
  • SLC25A45 
  • CYB5RL 
  • ARHGAP29 
  • LIG4 
  • IPO8 
  • STK39 
  • RRP8 
  • ENPP2 
  • PBLD 
  • BRSK1 
  • RPS6KA1 
  • NAALAD2 
  • NRAS 
  • DENR 
  • PICALM 
  • PAAF1 
  • ATAD2 
  • MSH3 
  • ATXN2 
  • SHMT2 
  • GSK3B 
  • SGPP2 
  • RHOT2 
Negative interactions
  • RPL19 
  • EEF1G 
  • TCEA3 
  • HSPA4L 
  • USP10 
  • ORMDL2 
  • PEX5L 
  • MORF4L1 
  • PEX14 
  • RPLP2 
  • ZDHHC4 
  • RPL37 
  • DBR1 
  • ING3 
  • ALDH1L2 
  • MRTO4 
  • RPS16 
  • RAD52 
  • RPL35 
  • FIGNL2 
  • XRN1 
  • NFYC 
  • CRLS1 
  • DNM1L 
  • AIRE 
  • MLH3 
  • RPS10 
  • RPL11 
  • RPL22L1 
  • DHODH 
  • MDH2 
  • DPH7 
  • MAPK11 
  • RPS27 
  • CS 
  • SLC13A4 
  • CSNK2B 
  • KIF6 
  • GGPS1 
  • PPAN 
  • VPS29 
  • IMPA2 
  • UNC50 
  • DPH1 
  • ARL9 
  • VPS26B 
  • CLPB 
  • BCS1L 
  • ASNS 
  • ABCF3 
  • CYB5R1 
  • GART 
  • CYC1 
  • SLC35B1 
  • EXO1 
  • DPH5 
  • ABCC5 
  • VDAC2 
  • EPS15 
  • DOHH 
  • CTU1 
  • MSH6 
  • PAPSS1 
  • GPD1L 
  • MAT2A 
  • RCOR1 
  • PPTC7 
  • MECOM 
  • DDX21 
  • ALG3 
  • WDR48 
  • SLC11A2 
  • DPH6 
  • OMA1 
  • CYCS 
  • LENG8 
  • PSAT1 
  • TYW3 
  • TRMT2A 
  • PCYT1A 
  • SORD 
  • RPL27 
  • DCPS 
  • SIRT4 
  • MTHFR 
  • SRM 
  • SCP2 
Modifier statisitcs
Record:
13 
Disorder:
Vriant:
Reference:
Effect type:
Expressivity(13)  
Modifier effect:
Altered waist circumference(4) ,Altered waist-to-height ratio(3) ,Altered severity(2) ,Altered waist-to-hip ratio(2) ,Altered expression of UCP3 mRNA(1) ,Risk factor(1)  
Details:
  • Variant 1:
    Gene:
    Genomic location:
    chr11:73694754
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist-to-hip ratio 
    Evidence:
    P=0.033 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 2:
    Gene:
    Genomic location:
    chr11:73694754
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist circumference 
    Evidence:
    P=0.048 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 3:
    Gene:
    Genomic location:
    chr11:73702071
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist circumference 
    Evidence:
    P=0.009 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 4:
    Gene:
    Genomic location:
    chr11:73702071
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist-to-hip ratio 
    Evidence:
    P=0.011 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 5:
    Gene:
    Genomic location:
    chr11:73702071
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist-to-height ratio 
    Evidence:
    P=0.022 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 6:
    Gene:
    Genomic location:
    chr11:73716469
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Risk factor 
    Evidence:
    HR=1.48, 95% CI: 1.09-2.00 
    Effect:
    The subjects with the rs3781907-G allele were at a higher risk for T2DM when compared with subjects with AA genotype, with hazard ratio (HR) of 1.48 (95%CI 1.09-2.00), p/q 0.011/0.100.
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 7:
    Gene:
    Genomic location:
    chr11:73713442
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist-to-height ratio 
    Evidence:
    P=0.003 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 8:
    Gene:
    Genomic location:
    chr11:73713442
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist circumference 
    Evidence:
    P=0.031 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 9:
    Gene:
    Genomic location:
    chr11:73711477
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist circumference 
    Evidence:
    P=0.018 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 10:
    Gene:
    Genomic location:
    chr11:73711477
    dbSNP ID:
    Target disease:
    Obesity(DOID_9970)
    Effect type:
    Expressivity 
    Modifier effect:
    Altered waist-to-height ratio 
    Evidence:
    P=0.024 
    Effect:
    Associated with abdominal obesity at the baseline
    Reference:
    Title:
    Variation in the UCP2 and UCP3 genes associates with abdominal obesity and serum lipids: the Finnish Diabetes Prevention Study.
    Species studied:
    Human
    Abstract:
    We explored the associations of three variants in the uncoupling protein 2 (UCP2) gene, one variant in the UCP2-UCP3 intergenic region and five variants in the uncoupling protein 3 (UCP3) gene with obesity and diabetes related traits in subjects with impaired glucose tolerance participating in Finnish Diabetes Prevention Study. Altogether 507 overweight individuals (body mass index: 31.2 +/- 4.5 kg/m2, age: 55 +/- 7 years) for whom DNA was available were randomized to either an intensified diet and physical activity group or to a conventional care control group.
  • Variant 11:
    Gene:
    Genomic location:
    chr11:73717074
    dbSNP ID:
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    P=0.03 
    Effect:
    Associated with the development NAFLD or disease severity.
    Reference:
    Title:
    Genetic analysis of nonalcoholic fatty liver disease within a Caribbean-Hispanic population.
    Species studied:
    Human
    Abstract:
    We explored potential genetic risk factors implicated in nonalcoholic fatty liver disease (NAFLD) within a Caribbean-Hispanic population in New York City. A total of 316 individuals including 40 subjects with biopsy-proven NAFLD, 24 ethnically matched non-NAFLD controls, and a 252 ethnically mixed random sampling of Bronx County, New York were analyzed. Genotype analysis was performed to determine allelic frequencies of 74 known single-nucleotide polymorphisms (SNPs) associated with NAFLD risk based on previous genome-wide association study (GWAS) and candidate gene studies. Additionally, the entire coding region of PNPLA3, a gene showing the strongest association to NAFLD was subjected to Sanger sequencing. Results suggest that both rare and common DNA variations in PNPLA3 and SAMM50 may be correlated with NAFLD in this small population study, while common DNA variations in CHUK and ERLIN1, may have a protective interaction. Common SNPs in ENPP1 and ABCC2 have suggestive association with fatty liver, but with less compelling significance. In conclusion, Hispanic patients of Caribbean ancestry may have different interactions with NAFLD genetic modifiers; therefore, further investigation with a larger sample size, into this Caribbean-Hispanic population is warranted.
  • Variant 12:
    Gene:
    Genomic location:
    chr11:73720165
    dbSNP ID:
    Alias:
    UCP3:c.-238C>T
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered severity 
    Evidence:
    P<0.05 
    Effect:
    Associated with the development NAFLD or disease severity.
    Reference:
    Title:
    Genetic analysis of nonalcoholic fatty liver disease within a Caribbean-Hispanic population.
    Species studied:
    Human
    Abstract:
    We explored potential genetic risk factors implicated in nonalcoholic fatty liver disease (NAFLD) within a Caribbean-Hispanic population in New York City. A total of 316 individuals including 40 subjects with biopsy-proven NAFLD, 24 ethnically matched non-NAFLD controls, and a 252 ethnically mixed random sampling of Bronx County, New York were analyzed. Genotype analysis was performed to determine allelic frequencies of 74 known single-nucleotide polymorphisms (SNPs) associated with NAFLD risk based on previous genome-wide association study (GWAS) and candidate gene studies. Additionally, the entire coding region of PNPLA3, a gene showing the strongest association to NAFLD was subjected to Sanger sequencing. Results suggest that both rare and common DNA variations in PNPLA3 and SAMM50 may be correlated with NAFLD in this small population study, while common DNA variations in CHUK and ERLIN1, may have a protective interaction. Common SNPs in ENPP1 and ABCC2 have suggestive association with fatty liver, but with less compelling significance. In conclusion, Hispanic patients of Caribbean ancestry may have different interactions with NAFLD genetic modifiers; therefore, further investigation with a larger sample size, into this Caribbean-Hispanic population is warranted.
  • Variant 13:
    Gene:
    Genomic location:
    chr11:73720165
    dbSNP ID:
    Alias:
    UCP3:c.-238C>T
    Target disease:
    Effect type:
    Expressivity 
    Modifier effect:
    Altered expression of UCP3 mRNA 
    Evidence:
    From review article 
    Effect:
    A SNP in the UCP3 promoter (-55C>T, rs1800849) has been associated with increased expression of UCP3 mRNA in the skeletal muscle of Pima Indians as well as with body mass
    Reference:
    Title:
    Genetic predisposition in NAFLD and NASH: impact on severity of liver disease and response to treatment.
    Species studied:
    Human
    Abstract:
    Liver fat deposition related to systemic insulin resistance defines non-alcoholic fatty liver disease (NAFLD) which, when associated with oxidative hepatocellular damage, inflammation, and activation of fibrogenesis, i.e. non-alcoholic steatohepatitis (NASH), can progress towards cirrhosis and hepatocellular carcinoma. Due to the epidemic of obesity, NAFLD is now the most frequent liver disease and the leading cause of altered liver enzymes in Western countries. Epidemiological, familial, and twin studies provide evidence for an element of heritability of NAFLD. Genetic modifiers of disease severity and progression have been identified through genome-wide association studies. These include the Patatin-like phosholipase domain-containing 3 (PNPLA3) gene variant I148M as a major determinant of inter-individual and ethnicity-related differences in hepatic fat content independent of insulin resistance and serum lipid concentration. Association studies confirm that the I148M polymorphism is also a strong modifier of NASH and progressive hepatic injury. Furthermore, a few large multicentre case-control studies have demonstrated a role for genetic variants implicated in insulin signalling, oxidative stress, and fibrogenesis in the progression of NAFLD towards fibrosing NASH, and confirm that hepatocellular fat accumulation and insulin resistance are key operative mechanisms closely involved in the progression of liver damage. It is now important to explore the molecular mechanisms underlying these associations between gene variants and progressive liver disease, and to evaluate their impact on the response to available therapies. It is hoped that this knowledge will offer further insights into pathogenesis, suggest novel therapeutic targets, and could help guide physicians towards individualised therapy that improves clinical outcome.