The SRAS-CoV-2 genome sequences and metadata used in this service are publicly available from GISAID (http://gisaid.org) and Genbank (https://www.ncbi.nlm.nih.gov/genbank). NC_045512.2 (SARS-CoV-2) was used as the reference sequence, and data were analyzed from 1,155,016 SARS-Cov-2 sequences after quality control as of Aug 06th. The variant annotation method was Annovar (version number: 2019Oct24).
变异 |
物种编号 |
染色体 |
位置 |
ref |
alt |
类型 |
区域 |
基因 |
氨基酸变化 |
氨基酸变化位置 |
同义/非同义 |
宿主 |
国家 |
突变频率 |
变异毒株 |
NC_045512.2:29838:C->T |
2697049 |
NC_045512.2 |
29838 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States,Chile |
0.0207‰ |
478
|
NC_045512.2:29838:C->A |
2697049 |
NC_045512.2 |
29838 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States,China |
0.0015‰ |
36
|
NC_045512.2:29838:CATGTGATTTTAATAGCTTCT->C |
2697049 |
NC_045512.2 |
29838 |
CATGTGATTTTAATAGCTTCT |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
Chile |
0‰ |
1
|
NC_045512.2:29837:CCATGTGATTTTAA->C |
2697049 |
NC_045512.2 |
29837 |
CCATGTGATTTTAA |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
Egypt |
0‰ |
1
|
NC_045512.2:29837:CCATGTG->C |
2697049 |
NC_045512.2 |
29837 |
CCATGTG |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0‰ |
1
|
NC_045512.2:29837:C->T |
2697049 |
NC_045512.2 |
29837 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States,United Kingdom,Australia |
0.0102‰ |
236
|
NC_045512.2:29837:C->A |
2697049 |
NC_045512.2 |
29837 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States,China |
0.0018‰ |
43
|
NC_045512.2:29837:C->G |
2697049 |
NC_045512.2 |
29837 |
C |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
China |
0.0004‰ |
10
|
NC_045512.2:29836:C->G |
2697049 |
NC_045512.2 |
29836 |
C |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
India |
0.0002‰ |
5
|
NC_045512.2:29836:C->CA |
2697049 |
NC_045512.2 |
29836 |
C |
CA |
indel |
downstream |
|
|
|
|
Homo sapiens |
India |
0‰ |
2
|
NC_045512.2:29836:C->T |
2697049 |
NC_045512.2 |
29836 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
Sweden,
United States,
China,
United Kingdom,
查看全部
|
0.0156‰ |
361
|
NC_045512.2:29836:CCCATGTGATTTTAATAGCTTCTT->C |
2697049 |
NC_045512.2 |
29836 |
CCCATGTGATTTTAATAGCTTCTT |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0‰ |
2
|
NC_045512.2:29836:C->A |
2697049 |
NC_045512.2 |
29836 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
Russia |
0.0016‰ |
37
|
NC_045512.2:29835:C->CCAT |
2697049 |
NC_045512.2 |
29835 |
C |
CCAT |
indel |
downstream |
|
|
|
|
Homo sapiens |
Romania |
0‰ |
1
|
NC_045512.2:29835:C->A |
2697049 |
NC_045512.2 |
29835 |
C |
A |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States |
0.0015‰ |
35
|
NC_045512.2:29835:CCCCA->C |
2697049 |
NC_045512.2 |
29835 |
CCCCA |
C |
indel |
downstream |
|
|
|
|
Homo sapiens |
Germany |
0‰ |
1
|
NC_045512.2:29835:C->T |
2697049 |
NC_045512.2 |
29835 |
C |
T |
snv |
downstream |
|
|
|
|
Homo sapiens |
United States,
China,
United Kingdom,
Chile,
Spain,
查看全部
|
0.038‰ |
875
|
NC_045512.2:29835:C->G |
2697049 |
NC_045512.2 |
29835 |
C |
G |
snv |
downstream |
|
|
|
|
Homo sapiens |
China |
0.0004‰ |
11
|
NC_045512.2:29834:T->TC |
2697049 |
NC_045512.2 |
29834 |
T |
TC |
indel |
downstream |
|
|
|
|
Homo sapiens |
United States |
0‰ |
1
|
NC_045512.2:29834:T->CGAAA |
2697049 |
NC_045512.2 |
29834 |
T |
CGAAA |
indel |
downstream |
|
|
|
|
Homo sapiens |
Iraq |
0‰ |
1
|